# Parameters
data_name = "Pou3f4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:29:13,320 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pou3f4: Motif: M00550_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pou3f4: #4

Cell type	Modisco	Homer
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0285608 / Pattern: metacluster_0/pattern_8 Significance: 0.0192485	Pattern: motif3.motif Significance: 0.0232483
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.0286916	Pattern: motif4.motif Significance: 0.0187053
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.014547399999999999	Pattern: motif14.motif Significance: 0.028440899999999998
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0229136	Pattern: motif24.motif Significance: 0.0179525

Unique Cell types only TF-MoDISco finds Pou3f4: #26

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0229222	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.044746	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0239984	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_7 Significance: 0.038649699999999995	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.026827800000000002	Absent
ES;C57BL_6J;R1;D;En	Pattern: metacluster_1/pattern_19 Significance: 0.05354640000000001	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.0366465	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0113635	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0253435	Absent
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.031375799999999995	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.00680081	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0116459	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.0113179	Absent
ES;E14;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.0501599	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.055583400000000005	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0215094	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0129474	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0293262	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0145718	Absent
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.0105555	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0338932	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0142121	Absent
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.057582100000000004	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.026198500000000003	Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO	Pattern: metacluster_1/pattern_21 Significance: 0.0374071	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.012187799999999999	Absent

No Cell types only Homer finds Pou3f4