In [1]:
# Parameters
data_name = "Foxj2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:48,698 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxj2: Motif: M01980_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxj2: #12

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00253838

Pattern: motif9.motif

Significance: 0.0597154

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.018852599999999997

/

Pattern: metacluster_0/pattern_13

Significance: 0.0244743

/

Pattern: metacluster_0/pattern_14

Significance: 0.024984299999999997

Pattern: motif7.motif

Significance: 0.0367096

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.035845

Pattern: motif16.motif

Significance: 0.047843199999999995

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0158147

Pattern: motif5.motif

Significance: 0.00579451

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00303801

Pattern: motif5.motif

Significance: 0.013843799999999998

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00239632

Pattern: motif15.motif

Significance: 0.054495400000000006

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00684095

Pattern: motif11.motif

Significance: 0.0262914

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0563647

Pattern: motif3.motif

Significance: 0.022812799999999998

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0337542

Pattern: motif4.motif

Significance: 0.00203231

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.052786900000000005

Pattern: motif6.motif

Significance: 0.0208039

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0396653

Pattern: motif5.motif

Significance: 0.033660199999999994

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00437262

Pattern: motif15.motif

Significance: 0.0575928

Unique Cell types only TF-MoDISco finds Foxj2: #21

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00292863

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00980597

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00771011

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00263216

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00168028

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00156832

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00154643

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.00195901

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00269775

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0122906

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.013493200000000002

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.0144237

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.035632

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00816341

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.012087100000000002

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00857837

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00422716

/

Pattern: metacluster_1/pattern_21

Significance: 0.0374548

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00550444

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.014737799999999999

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.00407358

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.00327289

Absent
No Cell types only Homer finds Foxj2