# Parameters
data_name = "Pou2f3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:28:45,406 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pou2f3: Motif: M00549_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pou2f3: #16

Cell type	Modisco	Homer
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.0586077	Pattern: motif13.motif Significance: 0.014377700000000002
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0117918	Pattern: motif9.motif Significance: 0.024760499999999998
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.012408200000000001	Pattern: motif6.motif Significance: 0.0332814
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00693817	Pattern: motif2.motif Significance: 0.0103726
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00380579	Pattern: motif3.motif Significance: 0.022574599999999997
NPC;mE6;A;GEO	Pattern: metacluster_1/pattern_9 Significance: 0.0303168	Pattern: motif16.motif Significance: 0.0425761
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0567153	Pattern: motif16.motif Significance: 0.0150715
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.0113386	Pattern: motif13.motif Significance: 0.0213643
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.00628251	Pattern: motif4.motif Significance: 0.0212239
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.011632799999999999	Pattern: motif2.motif Significance: 0.022199200000000002
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.00833847	Pattern: motif2.motif Significance: 0.013109
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.024624700000000003	Pattern: motif10.motif Significance: 0.0240135
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_8 Significance: 0.00431538	Pattern: motif3.motif Significance: 0.0216013
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.005985	Pattern: motif6.motif Significance: 0.0535889
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.018080099999999998	Pattern: motif14.motif Significance: 0.00976936
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.012913399999999998	Pattern: motif2.motif Significance: 0.028976599999999995

Unique Cell types only TF-MoDISco finds Pou2f3: #15

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.01326	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.017274599999999998	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.010384000000000001	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_7 Significance: 0.043465300000000005	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.00646519	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0295186	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.050288099999999995	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.03293630000000001	Absent
NPC;F129;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.016913099999999997	Absent
NPC;G4;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.022274799999999997	Absent
wES;Md_BRN;E11.5;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.023294400000000003	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0337454	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.0023872	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.00263329	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.0082524	Absent

Unique Cell types only Homer finds Pou2f3: #2

Cell type	Modisco	Homer
CN_PHT_RCPTR;A;GEO	Absent	Pattern: motif8.motif Significance: 0.015502100000000001
Melanotrope;A;GEO	Absent	Pattern: motif17.motif Significance: 0.0345305