# Parameters
data_name = "Fosb"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:07:21,696 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
memT;CD4+;A;CL |
Significance: 8.16665e-05 |
Significance: 0.016775599999999998 |
Th17;CD4+;A;CL |
Significance: 0.000594145 |
Significance: 0.00247074 |
BSPHL;A;CL |
Significance: 3.7367599999999997e-06 |
Significance: 8.51605e-05 |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0009274060000000001 |
Significance: 0.0032244 |
NTRPHL;A;CL |
Significance: 3.1446300000000004e-05 |
Significance: 0.052172699999999995 |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00185433 |
Significance: 3.93995e-05 |
DC_BMD;A;CL |
Significance: 0.00015796700000000001 |
Significance: 0.00067794 |
MCRPHG;A;CL |
Significance: 0.00028498900000000003 |
Significance: 0.000312114 |
Erythroblast;A;CL |
Significance: 0.00613107 |
Significance: 0.00881238 |
ES;MEF;A;CL |
Significance: 3.4570300000000005e-06 |
Significance: 4.53484e-05 |
SML_INTSTN;A;CL |
Significance: 5.352479999999999e-05 |
Significance: 0.00166185 |
Heart;D;En |
Significance: 9.3561e-07 |
Significance: 0.000976691 |
Adrenal;A;CL |
Significance: 1.8119e-05 |
Significance: 0.000256235 |
placenta;A;CL |
Significance: 1.4697700000000001e-06 |
Significance: 0.00011714 |
BRN;OLFTRY_BLB;A;CL |
Significance: 1.37087e-05 |
Significance: 0.0007738189999999999 |
BRN;FRNTL_CRTX;A;CL |
Significance: 3.19376e-07 |
Significance: 0.000625886 |
BRN;PTMN;A;CL |
Significance: 2.75593e-05 |
Significance: 0.000125079 |
BRN;SNSR_MTR_CRTX;A;CL |
Significance: 1.9706099999999998e-05 |
Significance: 0.000415337 |
gamma_delta_TCR;A;CL |
Significance: 6.817699999999999e-07 |
Significance: 0.004319399999999999 |
gamma_delta_TCR_MCR;A;CL |
Significance: 4.44653e-06 |
Significance: 0.0106301 |
gamma_delta_TCR_M-S-;A;CL |
Significance: 8.53717e-05 |
Significance: 0.00240397 |
NK;IL2+IL12+;A;CL |
Significance: 3.0292200000000003e-06 |
Significance: 0.000186768 |
NCR+ILC3;A;CL |
Significance: 2.45279e-06 |
Significance: 0.00382445 |
ILC2_Nippo;A;CL |
Significance: 1.77545e-05 |
Significance: 0.00024037 |
NCR+ILC3+IL23;A;CL |
Significance: 0.000137477 |
Significance: 3.2209099999999996e-05 |
ILC2;A;CL |
Significance: 6.56966e-06 |
Significance: 0.015986 |
Th2_nippo;A;CL |
Significance: 4.5803900000000004e-05 |
Significance: 0.00295125 |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0148114 |
Significance: 0.00456624 |
wCH12_drug;A;CL |
Significance: 0.027666900000000005 |
Significance: 2.68538e-06 |
ES;v6.5;A;GEO |
Significance: 3.1685599999999998e-06 |
Significance: 0.00011077899999999999 |
Mammary_GLND;A;GEO |
Significance: 6.474109999999999e-06 |
Significance: 2.54685e-05 |
ILC2+IL33+IL25;A;GEO |
Significance: 1.45239e-06 |
Significance: 0.00392832 |
ILC1;A;GEO |
Significance: 2.7910400000000003e-06 |
Significance: 0.00852011 |
ILC2;A;GEO |
Significance: 0.000358965 |
Significance: 0.0128869 |
ILC3;A;GEO |
Significance: 7.43318e-05 |
Significance: 0.00753282 |
ILC1_AbxGRMFree;A;GEO |
Significance: 2.14808e-06 |
Significance: 0.019546200000000003 |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.000174893 |
Significance: 0.0112433 |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.000291325 |
Significance: 0.00888167 |
TSLEC_SPLND;CD8+A;GEO |
Significance: 3.2326199999999996e-05 |
Significance: 0.00238715 |
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.000101266 |
Significance: 0.00269417 |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00011132899999999999 |
Significance: 0.00113866 |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 9.22206e-05 |
Significance: 0.00686912 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00011439299999999999 |
Significance: 0.000935363 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 9.25253e-06 |
Significance: 0.00650461 |
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 8.829170000000001e-05 |
Significance: 0.000375758 |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 4.2086e-05 |
Significance: 0.00712925 |
aB;A;GEO |
Significance: 0.0149446 |
Significance: 0.01637 |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 6.36908e-06 |
Significance: 0.000712642 |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 8.7243e-07 |
Significance: 0.000277966 |
Erythroid;Ter119+;A;GEO |
Significance: 0.00579062 |
Significance: 0.046277099999999995 |
AML;AE9a;A;GEO |
Significance: 0.00412071 |
Significance: 0.0463571 |
DC_LPS;6h;A;GEO |
Significance: 4.52921e-06 |
Significance: 0.000100171 |
DC_LPS;2h;A;GEO |
Significance: 1.21401e-06 |
Significance: 0.00015000700000000002 |
DC_pBMD;A;GEO |
Significance: 2.54645e-06 |
Significance: 0.00127899 |
SKN_EPTHL;A;GEO |
Significance: 6.846060000000001e-06 |
Significance: 0.000295328 |
BCK_SKN;A;GEO |
Significance: 2.14536e-05 |
Significance: 0.000353817 |
ePyramidal_NRN;A;GEO |
Significance: 0.00010511 |
Significance: 8.98202e-06 |
iPV_NRN;A;GEO |
Significance: 9.75855e-08 |
Significance: 0.000541 |
eCortical_NRN;A;GEO |
Significance: 0.000106535 |
Significance: 2.68349e-05 |
ThMS_MEC;Aire++;A;GEO |
Significance: 2.17734e-05 |
Significance: 0.00449643 |
Corticotrope;A;GEO |
Significance: 3.934930000000001e-06 |
Significance: 0.00369095 |
Melanotrope;A;GEO |
Significance: 1.06798e-05 |
Significance: 0.000767459 |
Mammary_BptfKO;A;GEO |
Significance: 6.02686e-07 |
Significance: 0.000153482 |
EPP;A;En |
Significance: 0.00472951 |
Significance: 0.00975541 |
pErythroblast;A;En |
Significance: 0.00692057 |
Significance: 0.0163826 |
MegP;A;En |
Significance: 0.00361343 |
Significance: 0.0104113 |
pCMP;A;CL |
Significance: 0.00378748 |
Significance: 0.00940765 |
DC_LPS;4h;A;En |
Significance: 9.64426e-06 |
Significance: 0.000642523 |
DC;A;En |
Significance: 1.4554599999999998e-06 |
Significance: 2.10171e-05 |
ES;ZhBTc4;1;D;GEO |
Significance: 0.00376372 |
Significance: 0.0481281 |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.00012341200000000002 |
Significance: 0.00015926799999999998 |
LNG;8wks;D;GEO |
Significance: 7.487739999999999e-06 |
Significance: 0.0100227 |
3134_mammaryADNCRCNM;D;GE |
Significance: 7.33051e-05 |
Significance: 0.000452151 |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 1.85827e-06 |
Significance: 0.000374306 |
416B_MP;CD34+;D;GEO |
Significance: 3.52904e-06 |
Significance: 0.000357877 |
WHL_BRN;8wks;D;GEO |
Significance: 6.5246e-06 |
Significance: 0.00033732699999999995 |
NIH3T3_FBROBLST;D;En |
Significance: 4.5721000000000005e-05 |
Significance: 4.47645e-05 |
FBRBLST;8wks;D;En |
Significance: 2.9035000000000002e-06 |
Significance: 3.95066e-05 |
3T3-L1;FBRBLST;D;En |
Significance: 4.82137e-06 |
Significance: 0.00037064199999999997 |
wES;LVR;E11.5;D.;En |
Significance: 0.00603668 |
Significance: 0.00825912 |
LNG;8wks;D;En |
Significance: 3.1394e-07 |
Significance: 0.000631514 |
LNG;P0;D;En |
Significance: 4.52385e-07 |
Significance: 0.00129424 |
Heart;P0;D;En |
Significance: 2.42819e-06 |
Significance: 0.00027104099999999997 |
Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 8.79094e-05 |
Significance: 0.00101876 |
Adipose;D;En |
Significance: 6.23026e-05 |
Significance: 0.000644972 |
EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.00592886 |
Significance: 0.00603237 |
416B_MP;CD34+;D;En |
Significance: 0.000128949 |
Significance: 0.000227655 |
Muller;P12;D;En |
Significance: 3.9918699999999994e-06 |
Significance: 1.90582e-05 |
WHL_BRN;8wks;D;En |
Significance: 0.000145589 |
Significance: 0.00012157 |
wES;Telenchephalon;D;En |
Significance: 6.0875e-05 |
Significance: 0.00034526099999999997 |
LRG_INTSTN;8wks;D;En |
Significance: 2.03729e-05 |
Significance: 0.00147368 |
STMCH;P0;D;En |
Significance: 1.5419799999999999e-06 |
Significance: 0.00803518 |
SKLTL_Muscle;8wks;D;En |
Significance: 8.47785e-06 |
Significance: 0.00323005 |
3134_mammaryADNCRCNM;D;En |
Significance: 6.00457e-05 |
Significance: 0.00023877299999999999 |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 4.91526e-05 |
Significance: 0.000230687 |
AML;D;En |
Significance: 0.000634605 |
Significance: 0.000561427 |
CH12.LX;D;En |
Significance: 0.0011535 |
Significance: 0.00225349 |
MEF.GATA-1-ER;D;En |
Significance: 0.00538894 |
Significance: 0.0477769 |
MEL;D;En |
Significance: 0.00248318 |
Significance: 0.0008321289999999999 |
NIH3T3;D;En |
Significance: 0.00033306 |
Significance: 0.000347821 |
MTR_NRN_MN1;methyl3;D;En |
Significance: 2.61843e-05 |
Significance: 0.000255346 |
MN1;D;En |
Significance: 0.00037024800000000005 |
Significance: 0.000983058 |
3T3-L1;D;En |
Significance: 1.62128e-05 |
Significance: 0.00023038 |
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 0.00404846 | Absent |
naiveCD8;A;CL |
Significance: 1.3176400000000001e-05 | Absent |
NK_SPLND;A;CL |
Significance: 1.10549e-06 | Absent |
proB;A;CL |
Significance: 0.0007760110000000001 | Absent |
matureB;A;CL |
Significance: 0.000314678 | Absent |
B1_B;A;CL |
Significance: 3.76767e-06 | Absent |
plasmaB;A;CL |
Significance: 1.79397e-05 | Absent |
aB_LPS;A;CL |
Significance: 1.7368499999999998e-05 | Absent |
aB_LPS+IL4;A;CL |
Significance: 3.3082300000000003e-06 | Absent |
aB_LPS+IL21;A;CL |
Significance: 7.10651e-05 | Absent |
aB_LSP+a_d_dextran;A;CL |
Significance: 1.78571e-05 | Absent |
aB_CD40+IL4;A;CL |
Significance: 0.000394692 | Absent |
Mast;A;CL |
Significance: 0.0009722730000000001 | Absent |
ESNPHL_SPLND_BlbCA;CL |
Significance: 0.000130786 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.000188215 | Absent |
Tfh;A;CL |
Significance: 0.00032177299999999997 | Absent |
Tfh_mut;A;CL |
Significance: 0.00753098 | Absent |
aNonTfh;A;CL |
Significance: 1.00694e-06 | Absent |
aNonTfh_mut;A;CL |
Significance: 9.016430000000001e-05 | Absent |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 1.98781e-05 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00132881 | Absent |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 2.54158e-06 | Absent |
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.000175361 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 7.24748e-05 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 2.54587e-06 | Absent |
CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 1.0352e-05 | Absent |
DP;A;CL |
Significance: 0.00292235 | Absent |
DP3a;A;CL |
Significance: 0.00263882 | Absent |
ES;E14;A;CL |
Significance: 0.000386556 | Absent |
LRG_INTSTN;A;CL |
Significance: 5.64054e-07 | Absent |
LNG;A;CL |
Significance: 6.06611e-06 | Absent |
Muscle;A;CL |
Significance: 0.000966827 | Absent |
Adipose;A;CL |
Significance: 1.22832e-06 | Absent |
Mammary;A;CL |
Significance: 6.906970000000001e-05 | Absent |
STMCH;A;CL |
Significance: 0.00013218 | Absent |
PNCRS;A;CL |
Significance: 1.3345400000000001e-06 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 8.657200000000001e-05 | Absent |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.00016298200000000002 | Absent |
BRN;CRBLM;A;CL |
Significance: 0.000409476 | Absent |
aB;CD180;A;CL |
Significance: 4.16853e-05 | Absent |
LNG_TRM_HSC;A;CL |
Significance: 0.00485431 | Absent |
SHRT_TRM_HSC;A;CL |
Significance: 0.00444958 | Absent |
ILC2precrsr;A;CL |
Significance: 0.000317871 | Absent |
ILC1;A;CL |
Significance: 5.25491e-06 | Absent |
aB_LPS+IL4_24h;A;CL |
Significance: 0.00190739 | Absent |
CH12_QNTPLE;A;CL |
Significance: 0.000462022 | Absent |
wCH12;A;CL |
Significance: 1.7020799999999998e-05 | Absent |
CH12;med14;A;CL |
Significance: 0.00037167099999999996 | Absent |
CLP;A;CL |
Significance: 0.000142239 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 4.50395e-07 | Absent |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 8.618650000000001e-06 | Absent |
NTRPHL;A;GEO |
Significance: 0.00367635 | Absent |
ES;J1;A;CL |
Significance: 0.00105337 | Absent |
ES;E14;A;GEO |
Significance: 3.0926e-07 | Absent |
ES;F1216;A;GEO |
Significance: 1.9415e-05 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 9.92467e-05 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 1.5549e-05 | Absent |
ILC2_AbxGRMFree;A;GEO |
Significance: 4.73323e-07 | Absent |
naiveT;CD8+;A;GEO |
Significance: 0.000796542 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 3.7611800000000004e-06 | Absent |
T_LCMV;CD8+;D33;A;GEO |
Significance: 9.352539999999998e-06 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 2.0495300000000003e-05 | Absent |
TExh_SPLND;CD8+;A;GEO |
Significance: 0.000250725 | Absent |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 3.0645900000000004e-05 | Absent |
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 8.571389999999999e-05 | Absent |
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 5.98009e-05 | Absent |
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 7.905649999999999e-05 | Absent |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 7.81217e-05 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.00023778599999999998 | Absent |
iNKT;A;GEO |
Significance: 0.000241009 | Absent |
prePLSM_B;A;GEO |
Significance: 0.000240547 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.0007931510000000001 | Absent |
ENDRM_ESD;A;GEO |
Significance: 6.484349999999999e-06 | Absent |
GCN_PHT_RCPTR;A;GEO |
Significance: 0.00021359599999999998 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.000330396 | Absent |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.030647300000000002 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.00033500699999999996 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.000670565 | Absent |
NPC;F129;A;GEO |
Significance: 7.5508e-07 | Absent |
NPC;G4;A;GEO |
Significance: 6.267380000000001e-06 | Absent |
NPC;Ch13;A;GEO |
Significance: 6.548139999999999e-07 | Absent |
NPC;mE6;A;GEO |
Significance: 2.4342e-06 | Absent |
iVIP_NRN;A;GEO |
Significance: 1.93258e-05 | Absent |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00280881 | Absent |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.000291996 | Absent |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.000709654 | Absent |
ES;JM8.N4;Asynch;A;GEO |
Significance: 0.000515751 | Absent |
ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.000433154 | Absent |
pMeg;A;En |
Significance: 0.00237216 | Absent |
MegEP;A;CL |
Significance: 0.00399281 | Absent |
pGMP;A;En |
Significance: 0.0020012999999999997 | Absent |
ES;ZhBTc4;2;D;GEO |
Significance: 0.00419143 | Absent |
ES;D0;D;GEO |
Significance: 0.00360568 | Absent |
LVR;8wks;D;GEO |
Significance: 0.00608668 | Absent |
naiveT_SPLND;CD4+;D;GEO |
Significance: 0.00021136400000000002 | Absent |
apCD4Eff;D;GEO |
Significance: 0.00010441299999999999 | Absent |
apTreg;D;GEO |
Significance: 0.00155978 | Absent |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.00352798 | Absent |
ES;E14;D;En |
Significance: 0.00424897 | Absent |
ES;C57BL_6J;R1;D;En |
Significance: 0.00277257 | Absent |
KDNY;P0;D;En |
Significance: 3.33039e-05 | Absent |
KDNY;8wks;D;En |
Significance: 0.00586168 | Absent |
LVR;8wks;D;En |
Significance: 0.00713199 | Absent |
LVR;P0;D;En |
Significance: 0.00020930700000000002 | Absent |
wES;LNG;E14.5;D;En |
Significance: 6.34834e-05 | Absent |
Heart;8wks;D;En |
Significance: 7.26571e-05 | Absent |
RTN;D1;D;En |
Significance: 6.6647e-05 | Absent |
CRBLM;D;En |
Significance: 0.000154926 | Absent |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.000152265 | Absent |
Fr_BRN;P0;D;En |
Significance: 4.1273e-05 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 2.29273e-05 | Absent |
Spleen;8wks;D;En |
Significance: 0.000328612 | Absent |
MEL_Znc_di-cl;24h;D;En |
Significance: 0.00151844 | Absent |