In [1]:
# Parameters
data_name = "Foxa2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:07,844 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxa2: Motif: M09104_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxa2: #14

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00345798

Pattern: motif9.motif

Significance: 0.0437123

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0043184

Pattern: motif15.motif

Significance: 0.0586408

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0110326

/

Pattern: metacluster_1/pattern_18

Significance: 0.0595881

Pattern: motif16.motif

Significance: 0.055944600000000004

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.025624400000000002

Pattern: motif5.motif

Significance: 0.0029997

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.000419769

/

Pattern: metacluster_0/pattern_13

Significance: 0.00613389

Pattern: motif7.motif

Significance: 0.0186711

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00277833

Pattern: motif15.motif

Significance: 0.019675

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00626215

Pattern: motif5.motif

Significance: 0.00461052

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0013277999999999999

Pattern: motif11.motif

Significance: 0.0439277

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0186229

/

Pattern: metacluster_1/pattern_10

Significance: 0.042187999999999996

Pattern: motif3.motif

Significance: 0.00448545

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0114965

Pattern: motif4.motif

Significance: 0.00954101

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0172114

Pattern: motif6.motif

Significance: 0.0116991

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.011935600000000001

Pattern: motif5.motif

Significance: 0.012681999999999999

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00327143

Pattern: motif15.motif

Significance: 0.0575928

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00363301

Pattern: motif16.motif

Significance: 0.058918

Unique Cell types only TF-MoDISco finds Foxa2: #21

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00206964

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00225349

Absent
ESNPHL_SPLND_BlbCA;CL

Pattern: metacluster_0/pattern_16

Significance: 0.0520839

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.012935399999999998

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00356674

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00382466

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.00278978

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.000585689

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0017256

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0282363

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.019377099999999998

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.024969099999999998

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00298172

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.00598626

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.034014800000000005

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00857837

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.014400799999999998

/

Pattern: metacluster_1/pattern_21

Significance: 0.00822019

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0190134

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.00232745

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.000993243

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.0122827

Absent
No Cell types only Homer finds Foxa2