# Parameters
data_name = "Foxg1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:41,376 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Foxg1: Motif: M00791_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxg1: #15

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.015155200000000002	Pattern: motif9.motif Significance: 0.0030464000000000003
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.0152939	Pattern: motif15.motif Significance: 0.00921948
LVR;P0;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.00922496 / Pattern: metacluster_1/pattern_18 Significance: 0.0527131	Pattern: motif16.motif Significance: 0.00441521
LNG;8wks;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.034968099999999995	Pattern: motif5.motif Significance: 0.00494516
LVR;8wks;D;En	Pattern: metacluster_0/pattern_13 Significance: 0.00513532	Pattern: motif7.motif Significance: 0.0206908
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00748224	Pattern: motif15.motif Significance: 0.037576099999999994
LNG;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.0153268	Pattern: motif5.motif Significance: 0.000736386
wES;LNG;E14.5;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.0129666	Pattern: motif11.motif Significance: 0.032542
STMCH;P0;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0198894	Pattern: motif3.motif Significance: 0.020981700000000002
LVR;8wks;D;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.014272299999999998	Pattern: motif4.motif Significance: 0.0567288
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.018571200000000003	Pattern: motif6.motif Significance: 0.036026499999999996
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.034536199999999996	Pattern: motif16.motif Significance: 0.0378604
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0124935 / Pattern: metacluster_1/pattern_21 Significance: 0.05411130000000001	Pattern: motif5.motif Significance: 0.0202613
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0113665	Pattern: motif15.motif Significance: 0.00631748
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.0159776	Pattern: motif16.motif Significance: 0.00942607

Unique Cell types only TF-MoDISco finds Foxg1: #18

Cell type	Modisco	Homer
KDNY;8wks;D;En	Pattern: metacluster_1/pattern_24 Significance: 0.00250892	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_23 Significance: 0.00549008	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_23 Significance: 0.0281541	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00166528	Absent
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00898532	Absent
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_22 Significance: 0.0009953289999999999	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00529728	Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.0471675 / Pattern: metacluster_0/pattern_19 Significance: 0.0475766	Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.048831400000000004	Absent
3134_mammaryADNCRCNM;D;GE	Pattern: metacluster_1/pattern_18 Significance: 0.0286284	Absent
KDNY;P0;D;En	Pattern: metacluster_1/pattern_7 Significance: 0.052834000000000006	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.0495388	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_23 Significance: 0.009790799999999999	Absent
LNG;A;CL	Pattern: metacluster_1/pattern_7 Significance: 0.016867700000000003	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.048668300000000005	Absent
placenta;A;CL	Pattern: metacluster_0/pattern_23 Significance: 0.0599011	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.0396995	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00357208	Absent

No Cell types only Homer finds Foxg1