In [1]:
# Parameters
data_name = "Vsx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:47:49,550 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Vsx2: Motif: M09180_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Vsx2: #19

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.029881

Pattern: motif14.motif

Significance: 0.03646869999999999

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00174051

Pattern: motif3.motif

Significance: 0.0121884

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00064516

Pattern: motif9.motif

Significance: 0.00238028

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00426023

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0009233189999999999

Pattern: motif2.motif

Significance: 0.00237484

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.000506511

Pattern: motif3.motif

Significance: 0.00357708

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00031428799999999997

Pattern: motif6.motif

Significance: 0.014389500000000001

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.000741919

Pattern: motif13.motif

Significance: 0.00161582

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0243768

Pattern: motif6.motif

Significance: 0.021476

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0417957

Pattern: motif9.motif

Significance: 0.032379700000000004

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.00229279

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00033555900000000003

Pattern: motif2.motif

Significance: 0.00483241

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00190837

Pattern: motif4.motif

Significance: 0.00746909

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.014482499999999999

Pattern: motif13.motif

Significance: 0.0093836

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00063172

Pattern: motif2.motif

Significance: 0.00285296

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.0136471

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013289600000000002

Pattern: motif16.motif

Significance: 0.011185200000000001

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.00370113

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.000262199

Pattern: motif2.motif

Significance: 0.00530036

Unique Cell types only TF-MoDISco finds Vsx2: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00103406

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00027695599999999997

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00025361599999999997

Absent
ROD_PHT_RCPTR_RTN;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.0431931

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.000973353

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0023166999999999997

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.00439193

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0152016

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0505839

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00347318

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00137997

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0460386

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.022274799999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0403923

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.026466900000000005

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0346939

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.025347900000000003

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0307546

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.019991599999999998

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00246187

Absent
Unique Cell types only Homer finds Vsx2: #3

Cell typeModiscoHomer
iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.038855900000000006

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif2.motif

Significance: 0.0403962

/

Pattern: motif8.motif

Significance: 0.00999839

ROD_PHT_RCPTR;A;GEOAbsent

Pattern: motif2.motif

Significance: 0.047377499999999996