In [1]:
# Parameters
data_name = "Tcfcp2l1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:43:02,322 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tcfcp2l1: Motif: M09127_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Tcfcp2l1
Unique Cell types only TF-MoDISco finds Tcfcp2l1: #14

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_17

Significance: 0.0510086

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_19

Significance: 0.000730828

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_21

Significance: 0.0538717

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 3.20301e-06

Absent
ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_14

Significance: 9.97446e-07

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_17

Significance: 5.81039e-06

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_21

Significance: 0.0015879000000000002

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_18

Significance: 7.429210000000001e-06

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_22

Significance: 0.036300099999999995

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.00301592

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0406413

/

Pattern: metacluster_1/pattern_27

Significance: 0.000548719

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0434446

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.058364

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_14

Significance: 2.19372e-06

Absent
Unique Cell types only Homer finds Tcfcp2l1: #2

Cell typeModiscoHomer
BCK_SKN;A;GEOAbsent

Pattern: motif5.motif

Significance: 0.051914300000000003

eye-NRL_RTN;A;CLAbsent

Pattern: motif17.motif

Significance: 0.0495958