In [1]:
# Parameters
data_name = "Cdx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:59:38,032 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cdx1: Motif: M09186_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Cdx1: #9

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00776786

/

Pattern: metacluster_0/pattern_5

Significance: 0.032491

Pattern: motif8.motif

Significance: 0.031865199999999996

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.017168

/

Pattern: metacluster_0/pattern_3

Significance: 0.011785200000000001

Pattern: motif5.motif

Significance: 0.00607097

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00709696

Pattern: motif4.motif

Significance: 0.00021873

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.037490699999999995

Pattern: motif9.motif

Significance: 0.0469923

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.028664699999999998

/

Pattern: metacluster_0/pattern_5

Significance: 0.0123869

Pattern: motif2.motif

Significance: 0.0417252

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0505598

Pattern: motif15.motif

Significance: 0.0462094

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.00758362

Pattern: motif3.motif

Significance: 0.000575666

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.018080099999999998

Pattern: motif14.motif

Significance: 0.048724300000000005

KDNY;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.031331200000000003

Pattern: motif4.motif

Significance: 0.019231

Unique Cell types only TF-MoDISco finds Cdx1: #14

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0462778

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.029044099999999996

/

Pattern: metacluster_1/pattern_13

Significance: 0.0122051

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00325154

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0353673

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0116831

Absent
AML;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.0307382

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0451408

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.041410300000000004

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.0016442999999999998

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.03735530000000001

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.028464599999999996

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.028503700000000003

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0241353

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.030415300000000003

Absent
Unique Cell types only Homer finds Cdx1: #1

Cell typeModiscoHomer
Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.049597300000000004