# Parameters
data_name = "Pitx3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:28:16,811 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pitx3: Motif: M00428_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pitx3: #5

Cell type	Modisco	Homer
Adipose;D;En	Pattern: metacluster_0/pattern_15 Significance: 0.00375303	Pattern: motif12.motif Significance: 0.0398187
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.000495433	Pattern: motif3.motif Significance: 0.053120900000000006 / Pattern: motif14.motif Significance: 0.02005
ROD_PHT_RCPTR_RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.0431506	Pattern: motif3.motif Significance: 0.0159936
CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0260876	Pattern: motif2.motif Significance: 0.0108561
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.0017268000000000001	Pattern: motif13.motif Significance: 0.0172927

Unique Cell types only TF-MoDISco finds Pitx3: #7

Cell type	Modisco	Homer
eye-NRL_RTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.030347700000000002	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.042561699999999994	Absent
Corticotrope;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00783482	Absent
wES;Hnd_BRN;E11.5;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.000483229	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.000726494	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00200571	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.00453342	Absent

Unique Cell types only Homer finds Pitx3: #3

Cell type	Modisco	Homer
RTN;A;GEO	Absent	Pattern: motif2.motif Significance: 0.008659100000000001
GCN_PHT_RCPTR;A;GEO	Absent	Pattern: motif2.motif Significance: 0.00457967
ROD_PHT_RCPTR;A;GEO	Absent	Pattern: motif2.motif Significance: 0.0031401999999999997