In [1]:
# Parameters
data_name = "Foxo3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:09:25,611 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxo3: Motif: M09110_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxo3: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0157176

Pattern: motif9.motif

Significance: 0.0276965

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0202028

Pattern: motif15.motif

Significance: 0.00997554

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0114619

Pattern: motif16.motif

Significance: 0.047843199999999995

LVR;8wks;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.00759052

Pattern: motif7.motif

Significance: 0.0367096

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00303801

Pattern: motif5.motif

Significance: 0.00369876

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.012775700000000001

Pattern: motif15.motif

Significance: 0.015300999999999999

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.000125112

Pattern: motif11.motif

Significance: 0.03981319999999999

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0192345

Pattern: motif3.motif

Significance: 0.0142028

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.014976

Pattern: motif5.motif

Significance: 0.033660199999999994

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.011809700000000001

Pattern: motif15.motif

Significance: 0.0575928

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.010945299999999998

Pattern: motif16.motif

Significance: 0.00942607

Unique Cell types only TF-MoDISco finds Foxo3: #21

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.0436887

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.032867

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0294084

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00243856

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00761412

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.00425613

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0023510000000000002

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.013048400000000002

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00581892

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.012851300000000001

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.035632

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.0195598

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00727897

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0187283

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0242153

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00621517

/

Pattern: metacluster_1/pattern_21

Significance: 0.0469786

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0028661

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.0029101999999999995

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0170417

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.00603004

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.0444944

Absent
No Cell types only Homer finds Foxo3