In [1]:
# Parameters
data_name = "Hoxb7"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:52,920 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxb7: Motif: M09206_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxb7: #13

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00518991

/

Pattern: metacluster_0/pattern_25

Significance: 0.0595383

Pattern: motif4.motif

Significance: 0.0159747

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00195839

/

Pattern: metacluster_0/pattern_5

Significance: 0.0108027

Pattern: motif8.motif

Significance: 0.00561628

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00534071

/

Pattern: metacluster_0/pattern_3

Significance: 0.00302253

Pattern: motif5.motif

Significance: 0.028641500000000004

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.00159325

/

Pattern: metacluster_0/pattern_18

Significance: 0.0172025

Pattern: motif6.motif

Significance: 0.00513837

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.029696499999999997

Pattern: motif5.motif

Significance: 0.0214784

npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00053187

/

Pattern: metacluster_0/pattern_7

Significance: 0.00125823

Pattern: motif7.motif

Significance: 0.0265368

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00978278

Pattern: motif4.motif

Significance: 0.0120868

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.052956600000000006

Pattern: motif3.motif

Significance: 0.0360655

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.00803367

/

Pattern: metacluster_0/pattern_5

Significance: 0.029197000000000004

Pattern: motif2.motif

Significance: 0.0224549

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.00848094

Pattern: motif3.motif

Significance: 0.013162100000000001

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.017134299999999998

Pattern: motif15.motif

Significance: 0.0436849

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0239296

Pattern: motif3.motif

Significance: 0.033429900000000005

KDNY;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0200801

Pattern: motif4.motif

Significance: 0.0205271

Unique Cell types only TF-MoDISco finds Hoxb7: #26

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0445779

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.029044099999999996

/

Pattern: metacluster_1/pattern_13

Significance: 0.00362515

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00168139

Absent
AML;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.027563599999999997

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00581348

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00223546

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.00225188

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00132213

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0171296

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.021719299999999997

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.0054235

Absent
Adrenal;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.00660244

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0412108

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.014368899999999999

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.0160966

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0195486

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.021933900000000003

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0237481

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.048694699999999994

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0134667

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0437603

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.029916900000000003

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.028377299999999998

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0116928

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00969875

Absent
No Cell types only Homer finds Hoxb7