In [1]:
# Parameters
data_name = "Tfap4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:44:54,997 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tfap4: Motif: M01717_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tfap4: #17

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0359747

Pattern: motif5.motif

Significance: 0.00134148

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00770948

Pattern: motif12.motif

Significance: 0.0295916

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0171961

Pattern: motif6.motif

Significance: 0.0409095

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.044669099999999996

Pattern: motif5.motif

Significance: 0.00618658

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.044349400000000004

Pattern: motif7.motif

Significance: 0.020617700000000003

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00411744

Pattern: motif15.motif

Significance: 0.0241832

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0189738

Pattern: motif18.motif

Significance: 0.010174299999999999

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0562403

Pattern: motif13.motif

Significance: 0.038454300000000004

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0345445

Pattern: motif10.motif

Significance: 0.0303745

Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.016851400000000002

Pattern: motif11.motif

Significance: 0.04500440000000001

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.015090200000000002

Pattern: motif2.motif

Significance: 0.00314212

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.019149

Pattern: motif16.motif

Significance: 0.013178

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0439166

Pattern: motif4.motif

Significance: 0.0104826

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0028188

Pattern: motif4.motif

Significance: 0.00636119

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00723974

Pattern: motif13.motif

Significance: 0.05492180000000001

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0488336

Pattern: motif19.motif

Significance: 0.0324823

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.022980700000000003

Pattern: motif15.motif

Significance: 0.039407

Unique Cell types only TF-MoDISco finds Tfap4: #31

Cell typeModiscoHomer
plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.04944930000000001

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.05910990000000001

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0469458

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0310368

/

Pattern: metacluster_0/pattern_22

Significance: 0.0395778

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0318998

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.00987373

/

Pattern: metacluster_0/pattern_22

Significance: 0.0202732

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.018145500000000002

/

Pattern: metacluster_0/pattern_22

Significance: 0.024496200000000003

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0379694

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00669927

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00482353

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0123116

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00227489

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00762245

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0541784

Absent
eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.035987599999999995

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.031541700000000006

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0190163

Absent
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0519653

Absent
BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.0463288

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0521226

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0588839

/

Pattern: metacluster_1/pattern_10

Significance: 0.0252931

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.026354200000000005

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.05240890000000001

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.0104587

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0168192

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0482898

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0502044

/

Pattern: metacluster_1/pattern_15

Significance: 0.0191338

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0247718

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0139424

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.033750800000000004

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0375316

Absent
Unique Cell types only Homer finds Tfap4: #10

Cell typeModiscoHomer
proB;A;CLAbsent

Pattern: motif15.motif

Significance: 0.0468022

preB;A;CLAbsent

Pattern: motif12.motif

Significance: 0.05362130000000001

NPC;F129;A;GEOAbsent

Pattern: motif10.motif

Significance: 0.0206951

B_SPLND;A;GEOAbsent

Pattern: motif21.motif

Significance: 0.0516087

preB_BMD;A;GEOAbsent

Pattern: motif9.motif

Significance: 0.0329378

B;B220_CD43;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.0145882

NPC;Ch13;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.027757999999999998

3T3-L1;D;EnAbsent

Pattern: motif15.motif

Significance: 0.056063699999999994

Muscle;A;CLAbsent

Pattern: motif19.motif

Significance: 0.0528564

wES;WHL_BRN;E14.5;D;EnAbsent

Pattern: motif10.motif

Significance: 0.0333886