In [1]:
# Parameters
data_name = "Evx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:06:31,284 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Evx2: Motif: M09173_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Evx2: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0168408

/

Pattern: metacluster_0/pattern_5

Significance: 0.0150246

Pattern: motif4.motif

Significance: 0.044282199999999994

/

Pattern: motif8.motif

Significance: 0.00589111

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.023406

/

Pattern: metacluster_0/pattern_3

Significance: 0.00873168

Pattern: motif3.motif

Significance: 0.0276257

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.032775599999999995

Pattern: motif14.motif

Significance: 0.0337605

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 3.18087e-05

/

Pattern: metacluster_1/pattern_13

Significance: 0.0470482

Pattern: motif4.motif

Significance: 6.63204e-05

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0165122

Pattern: motif13.motif

Significance: 0.0093836

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0371747

Pattern: motif16.motif

Significance: 0.011185200000000001

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.012645700000000001

Pattern: motif9.motif

Significance: 0.00616326

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0303168

Pattern: motif16.motif

Significance: 0.0425761

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.011448200000000002

Pattern: motif13.motif

Significance: 0.00839477

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.00011536299999999999

Pattern: motif3.motif

Significance: 0.00228985

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.011034799999999999

Pattern: motif2.motif

Significance: 0.00290375

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00865288

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00638908

Pattern: motif2.motif

Significance: 0.0037329999999999998

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00619281

Pattern: motif3.motif

Significance: 0.00353399

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0067648

Pattern: motif4.motif

Significance: 0.00461458

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0107316

Pattern: motif2.motif

Significance: 0.00261096

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0196042

Pattern: motif10.motif

Significance: 0.0136471

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00445866

Pattern: motif3.motif

Significance: 0.0256959

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0118805

Pattern: motif6.motif

Significance: 0.0130058

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.028245599999999996

Pattern: motif14.motif

Significance: 0.00526077

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0117914

Pattern: motif2.motif

Significance: 0.00305889

Unique Cell types only TF-MoDISco finds Evx2: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.026648200000000004

/

Pattern: metacluster_0/pattern_25

Significance: 0.00603308

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00837683

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.012045700000000001

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.027774599999999997

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0199143

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00347318

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0551321

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.04384469999999999

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.039403

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0236002

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.022274799999999997

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0368991

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0110853

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0535627

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 9.670669999999999e-08

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.01275

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00263329

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0107473

Absent
Unique Cell types only Homer finds Evx2: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0498961

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0116849

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.011949

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.023018