# Parameters
data_name = "Hoxa11"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:04,600 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxa11: Motif: M03274_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa11: #7

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.01326 / Pattern: metacluster_0/pattern_5 Significance: 0.0385336	Pattern: motif8.motif Significance: 0.0147256
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0247861 / Pattern: metacluster_1/pattern_13 Significance: 0.0361009	Pattern: motif11.motif Significance: 0.05921509999999999
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00521445 / Pattern: metacluster_0/pattern_3 Significance: 0.031043099999999997	Pattern: motif5.motif Significance: 0.029784699999999997 / Pattern: motif13.motif Significance: 0.0508004
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0366426	Pattern: motif4.motif Significance: 0.0108932
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.020186700000000002	Pattern: motif2.motif Significance: 0.0463649
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.0324256	Pattern: motif15.motif Significance: 0.0246857
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.0239654	Pattern: motif3.motif Significance: 0.0523664

Unique Cell types only TF-MoDISco finds Hoxa11: #9

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.027385400000000004	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0171293	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_22 Significance: 0.032548400000000005	Absent
LNG_TRM_HSC;A;CL	Pattern: metacluster_1/pattern_20 Significance: 0.0397849	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.014462200000000001	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.058839199999999994	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.053143899999999994	Absent
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.058556500000000004	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.055830700000000004	Absent

Unique Cell types only Homer finds Hoxa11: #1

Cell type	Modisco	Homer
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.013596200000000001