# Parameters
data_name = "Hoxa13"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:10,905 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxa13: Motif: M09202_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa13: #7

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0462443 / Pattern: metacluster_0/pattern_5 Significance: 0.00827151	Pattern: motif8.motif Significance: 0.0494681
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0417414 / Pattern: metacluster_1/pattern_13 Significance: 0.0593993	Pattern: motif11.motif Significance: 0.05921509999999999
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0226762 / Pattern: metacluster_0/pattern_3 Significance: 0.0151596	Pattern: motif5.motif Significance: 0.00615674
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0144362	Pattern: motif4.motif Significance: 0.00183603
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0278582	Pattern: motif2.motif Significance: 0.0493658
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.0413211	Pattern: motif15.motif Significance: 0.05654580000000001
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.00624728	Pattern: motif3.motif Significance: 0.012400299999999998

Unique Cell types only TF-MoDISco finds Hoxa13: #10

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.027385400000000004	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0208899	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0276435	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0407471	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0410526	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.0352216	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.028302099999999997	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0268865	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0430723	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0201927	Absent

Unique Cell types only Homer finds Hoxa13: #1

Cell type	Modisco	Homer
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.00869523