In [1]:
# Parameters
data_name = "Esx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:05:44,198 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Esx1: Motif: M00424_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Esx1: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00667312

Pattern: motif4.motif

Significance: 0.0272802

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00302253

Pattern: motif3.motif

Significance: 0.00864028

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.029881

Pattern: motif14.motif

Significance: 0.0337605

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0239296

/

Pattern: metacluster_0/pattern_8

Significance: 0.00388276

Pattern: motif3.motif

Significance: 0.00267534

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00578856

Pattern: motif9.motif

Significance: 0.00584502

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00181216

Pattern: motif6.motif

Significance: 0.0107547

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00474508

Pattern: motif2.motif

Significance: 0.00389667

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00380579

Pattern: motif3.motif

Significance: 0.00528238

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.038613

Pattern: motif3.motif

Significance: 0.0168887

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.000741919

Pattern: motif13.motif

Significance: 0.00839477

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00434235

Pattern: motif4.motif

Significance: 0.00208133

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00481806

Pattern: motif2.motif

Significance: 0.00518729

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0597476

Pattern: motif17.motif

Significance: 0.011949

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00533169

Pattern: motif2.motif

Significance: 0.0031895

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0076155

Pattern: motif10.motif

Significance: 0.0136471

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.017357400000000002

Pattern: motif13.motif

Significance: 0.00963636

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00371071

Pattern: motif6.motif

Significance: 0.0146269

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00829087

Pattern: motif14.motif

Significance: 0.00687812

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00589717

Pattern: motif16.motif

Significance: 0.011185200000000001

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0049902

Pattern: motif2.motif

Significance: 0.00473719

Unique Cell types only TF-MoDISco finds Esx1: #19

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0591399

/

Pattern: metacluster_0/pattern_25

Significance: 0.00379006

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00680081

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00431057

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00720191

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00489096

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.03337

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00311583

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0399505

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.059852999999999996

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0279938

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.03421969999999999

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.019

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0126876

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00172457

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0348825

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.033016199999999996

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00223894

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00320314

Absent
Unique Cell types only Homer finds Esx1: #2

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00999839

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0439506