In [1]:
# Parameters
data_name = "Foxp2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:09:39,333 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxp2: Motif: M00792_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxp2: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00345798

Pattern: motif9.motif

Significance: 0.0233755

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00301461

Pattern: motif15.motif

Significance: 0.0544118

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.010723200000000002

Pattern: motif16.motif

Significance: 0.0425904

LVR;8wks;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.00613389

Pattern: motif7.motif

Significance: 0.0206908

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.010108200000000001

Pattern: motif5.motif

Significance: 0.00369876

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00186425

Pattern: motif15.motif

Significance: 0.015300999999999999

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00178276

Pattern: motif11.motif

Significance: 0.0255452

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.016922799999999998

Pattern: motif3.motif

Significance: 0.00745411

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.011417299999999998

Pattern: motif5.motif

Significance: 0.0212162

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00257319

Pattern: motif15.motif

Significance: 0.0516519

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00288083

Pattern: motif16.motif

Significance: 0.05499640000000001

Unique Cell types only TF-MoDISco finds Foxp2: #21

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00206964

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00225349

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00864846

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00168028

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00160219

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.000951452

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00019979900000000002

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.00366737

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.019408099999999998

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.019965200000000002

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.028648900000000005

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00190489

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00532643

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0114965

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0172114

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00769701

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.00986117

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.00110803

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0328398

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.000599933

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.00803004

Absent
No Cell types only Homer finds Foxp2