# Parameters
data_name = "Rest"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Rest: #31
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 9.9125e-21 |
Significance: 1.49864e-06 |
| wES;limb;E11.5;D;En |
Significance: 6.57527e-18 |
Significance: 2.1301100000000002e-05 |
| wES;Fr_lmb;E11.5;D;En |
Significance: 3.33727e-21 |
Significance: 5.44494e-08 |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 1.41907e-18 |
Significance: 4.6341099999999996e-05 |
| wES;FaceP;E14.5;D;En |
Significance: 1.5625299999999998e-18 |
Significance: 6.3735e-05 |
| wES;FaceP;E11.5;D;En |
Significance: 2.90807e-19 |
Significance: 2.85997e-08 |
| wES;NRL_Tube;E11.5;D;En |
Significance: 3.03217e-15 |
Significance: 0.000323795 |
| STMCH;P0;D;En |
Significance: 1.51243e-15 |
Significance: 0.017159400000000002 |
| AML;D;En |
Significance: 3.2924300000000005e-16 |
Significance: 0.000262035 |
| NIH3T3;D;En |
Significance: 3.82201e-18 |
Significance: 9.41781e-07 |
| 3T3-L1;D;En |
Significance: 3.0736099999999998e-21 |
Significance: 0.000497987 |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.00132582 |
Significance: 0.039837 |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 2.66038e-13 |
Significance: 4.79732e-05 |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 2.15941e-06 |
Significance: 0.033621899999999996 |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0193919 |
Significance: 6.58826e-05 |
| pCMP;A;CL |
Significance: 1.39161e-16 |
Significance: 0.000456666 |
| ES;ZhBTc4;1;D;GEO |
Significance: 1.03433e-17 |
Significance: 0.0325033 |
| ES;D0;D;GEO |
Significance: 4.45929e-15 |
Significance: 0.000584255 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 1.1984200000000001e-20 |
Significance: 0.000540597 |
| NIH3T3_FBROBLST;D;En |
Significance: 5.917780000000001e-19 |
Significance: 1.27313e-06 |
| KDNY;P0;D;En |
Significance: 9.74835e-18 |
Significance: 9.88938e-06 |
| ES;F1216;A;GEO |
Significance: 0.00411179 |
Significance: 0.013324 |
| LNG;P0;D;En |
Significance: 1.24603e-17 |
Significance: 0.000993811 |
| ES;v6.5;A;GEO |
Significance: 5.32378e-17 |
Significance: 0.013034299999999999 |
| wES;LNG;E14.5;D;En |
Significance: 1.66887e-23 |
Significance: 9.201829999999999e-05 |
| Heart;P0;D;En |
Significance: 2.6423099999999998e-20 |
Significance: 0.0009464289999999999 |
| wES;RTN;E11.5;D;En |
Significance: 3.12079e-13 |
Significance: 0.00017702 |
| wES;MSDRM;E11.5;D;En |
Significance: 2.63528e-16 |
Significance: 0.00122172 |
| Muller;P12;D;En |
Significance: 1.19397e-17 |
Significance: 0.000549431 |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 5.77535e-14 |
Significance: 0.000496569 |
| wES;Md_BRN;E11.5;D;En |
Significance: 4.23245e-15 |
Significance: 0.050535500000000004 |
Unique Cell types only TF-MoDISco finds Rest: #54
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 6.37626e-14 | Absent |
| aB;A;GEO |
Significance: 2.50892e-16 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 6.489899999999999e-19 | Absent |
| A20;B-lymphoma;D;En |
Significance: 7.756469999999999e-16 | Absent |
| CH12.LX;D;En |
Significance: 1.95532e-18 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 4.507630000000001e-16 | Absent |
| AML;AE9a;A;GEO |
Significance: 2.53468e-15 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 6.688270000000001e-13 | Absent |
| MEL;D;En |
Significance: 4.2747800000000006e-16 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 2.1304e-22 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 6.9213100000000016e-18 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 1.7087299999999998e-16 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 1.5197e-14 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 2.16586e-14 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 1.62318e-11 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 4.39069e-17 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 2.627e-15 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 1.60594e-12 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 1.4192600000000001e-15 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 1.6577799999999998e-12 | Absent |
| NPC;G4;A;GEO |
Significance: 4.35785e-11 | Absent |
| NPC;Ch13;A;GEO |
Significance: 1.0704200000000001e-13 | Absent |
| NPC;mE6;A;GEO |
Significance: 4.7527999999999994e-14 | Absent |
| DP3a;A;CL |
Significance: 1.01691e-15 | Absent |
| DP3b;A;CL |
Significance: 1.3421099999999999e-13 | Absent |
| ES;E14;A;CL |
Significance: 2.54589e-11 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 3.88784e-15 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 1.36496e-13 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 1.85251e-15 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 4.89159e-15 | Absent |
| MegEP;A;CL |
Significance: 3.3398e-16 | Absent |
| MegP;A;En |
Significance: 1.69377e-15 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0292877 | Absent |
| pGMP;A;En |
Significance: 3.65622e-16 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 1.91445e-20 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 6.54185e-13 | Absent |
| apTreg;D;GEO |
Significance: 1.51099e-14 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 1.4250700000000001e-19 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 6.933060000000001e-18 | Absent |
| ES;E14;D;En |
Significance: 2.3787600000000004e-21 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 1.57909e-14 | Absent |
| CLP;A;CL |
Significance: 1.80535e-15 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 1.42325e-18 | Absent |
| ES;J1;A;CL |
Significance: 7.641609999999999e-13 | Absent |
| ES;E14;A;GEO |
Significance: 2.3824700000000002e-18 | Absent |
| LVR;P0;D;En |
Significance: 2.61357e-13 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 2.89986e-13 | Absent |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 1.85178e-16 | Absent |
| apThEff;CD4+;8wks;D;En. |
Significance: 1.11399e-11 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 3.23615e-12 | Absent |
| apTreg;8wk;D;En |
Significance: 1.16533e-15 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 2.3995300000000004e-17 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 8.17775e-16 | Absent |
| immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 8.12203e-17 | Absent |
