In [1]:
# Parameters
data_name = "Nobox"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:50,865 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nobox: Motif: M00448_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nobox: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00330627

Pattern: motif4.motif

Significance: 0.051075999999999996

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00250467

Pattern: motif3.motif

Significance: 0.0220446

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.032775599999999995

Pattern: motif14.motif

Significance: 0.047305

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.015249

Pattern: motif3.motif

Significance: 0.0388461

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00710957

Pattern: motif9.motif

Significance: 0.00790243

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0486906

Pattern: motif3.motif

Significance: 0.0493859

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.012170700000000001

Pattern: motif6.motif

Significance: 0.0211703

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00474508

Pattern: motif2.motif

Significance: 0.00916607

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00416039

Pattern: motif3.motif

Significance: 0.00782481

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.042789

Pattern: motif3.motif

Significance: 0.0228253

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0188816

Pattern: motif13.motif

Significance: 0.0180442

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00818556

Pattern: motif4.motif

Significance: 0.00461458

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00481806

Pattern: motif2.motif

Significance: 0.0130923

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00533169

Pattern: motif2.motif

Significance: 0.013843000000000001

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0557966

Pattern: motif10.motif

Significance: 0.022387900000000002

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.041188800000000005

Pattern: motif14.motif

Significance: 0.027291000000000003

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.044040300000000004

Pattern: motif13.motif

Significance: 0.022543900000000002

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.008165100000000002

Pattern: motif6.motif

Significance: 0.0210396

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0589114

Pattern: motif16.motif

Significance: 0.0244056

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00433161

Pattern: motif2.motif

Significance: 0.0195912

Unique Cell types only TF-MoDISco finds Nobox: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.05608540000000001

/

Pattern: metacluster_0/pattern_25

Significance: 0.011788600000000002

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0354594

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00216904

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.052224099999999996

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.013436600000000002

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00188256

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.057272699999999996

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.052380899999999994

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0475355

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0354459

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.016833599999999997

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0444967

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05144259999999999

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0212948

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0196921

Absent
Unique Cell types only Homer finds Nobox: #5

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0498961

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0409827

SML_INTSTN;A;CLAbsent

Pattern: motif3.motif

Significance: 0.047646600000000004

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0240109

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.018513099999999998