# Parameters
data_name = "Hoxa9"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:28,900 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxa9: Motif: M00475_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa9: #12

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.00723305	Pattern: motif4.motif Significance: 0.0159747
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00548052 / Pattern: metacluster_0/pattern_5 Significance: 0.00223099	Pattern: motif8.motif Significance: 0.00392457
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00131461 / Pattern: metacluster_0/pattern_3 Significance: 0.00960405	Pattern: motif5.motif Significance: 0.018026
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_11 Significance: 0.00159325 / Pattern: metacluster_0/pattern_18 Significance: 0.0554889	Pattern: motif6.motif Significance: 0.00589715
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.0283442	Pattern: motif5.motif Significance: 0.00361011
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00265704 / Pattern: metacluster_0/pattern_7 Significance: 0.00134918	Pattern: motif7.motif Significance: 0.020782299999999997
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.025259200000000002	Pattern: motif4.motif Significance: 0.022179499999999998
Adipose;D;En	Pattern: metacluster_0/pattern_22 Significance: 0.032548400000000005	Pattern: motif17.motif Significance: 0.0487625
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_0 Significance: 7.97577e-07 / Pattern: metacluster_0/pattern_5 Significance: 0.00629848	Pattern: motif2.motif Significance: 0.00514864
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.0239654	Pattern: motif3.motif Significance: 0.0107326
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.00505379	Pattern: motif15.motif Significance: 0.0126792
KDNY;P0;D;En	Pattern: metacluster_1/pattern_3 Significance: 1.3183499999999998e-05	Pattern: motif4.motif Significance: 0.000285269

Unique Cell types only TF-MoDISco finds Hoxa9: #21

Cell type	Modisco	Homer
MPP;A;CL	Pattern: metacluster_1/pattern_21 Significance: 0.0322278	Absent
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.027385400000000004	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00845693 / Pattern: metacluster_1/pattern_13 Significance: 0.0103644	Absent
wES;NRL_Tube;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00379412	Absent
AML;D;En	Pattern: metacluster_1/pattern_18 Significance: 4.05802e-05	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_17 Significance: 0.00841562	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.019162000000000002	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_11 Significance: 0.015247299999999998	Absent
wES;posterior;1;E9.5;A;GEO	Pattern: metacluster_1/pattern_9 Significance: 0.00590582	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0411295	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.05282230000000001	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.03993680000000001	Absent
Adrenal;A;CL	Pattern: metacluster_1/pattern_10 Significance: 4.4286800000000004e-05	Absent
LNG_TRM_HSC;A;CL	Pattern: metacluster_1/pattern_20 Significance: 0.0368991	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.034726599999999996	Absent
NIH3T3_FBROBLST;D;En	Pattern: metacluster_1/pattern_20 Significance: 3.6958699999999996e-05	Absent
CLP;A;CL	Pattern: metacluster_1/pattern_21 Significance: 0.00227133	Absent
KDNY;8wks;D;En	Pattern: metacluster_1/pattern_19 Significance: 1.77076e-06	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.029375599999999998	Absent
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.023939	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0227313	Absent

No Cell types only Homer finds Hoxa9