# Parameters
data_name = "Nfic"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Nfic: #4
| Cell type | Modisco | Homer |
|---|---|---|
| SKLTL_Muscle;8wks;D;En |
Significance: 0.00730796 |
Significance: 0.00764112 |
| G_NRN_P;A;GEO |
Significance: 0.0009132 |
Significance: 0.027844400000000002 |
| CRBLM;D;En |
Significance: 0.00797205 |
Significance: 0.056275900000000004 |
| Muscle;A;CL |
Significance: 0.00652398 |
Significance: 0.0224106 |
Unique Cell types only TF-MoDISco finds Nfic: #152
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00350263 | Absent |
| naiveCD8;A;CL |
Significance: 0.00295742 | Absent |
| memT;CD4+;A;CL |
Significance: 0.00806908 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0118985 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0180286 | Absent |
| proB;A;CL |
Significance: 0.0376804 | Absent |
| immatureB;A;CL |
Significance: 0.0217315 | Absent |
| matureB;A;CL |
Significance: 0.0155066 | Absent |
| plasmaB;A;CL |
Significance: 0.00886917 | Absent |
| Mast;A;CL |
Significance: 0.00486744 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0441246 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.00674112 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0587783 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00931091 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00556607 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.00512136 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.0353452 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.014808000000000002 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.029805400000000003 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.029462799999999997 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0185687 | Absent |
| Erythroblast;A;CL |
Significance: 0.0165267 | Absent |
| DP;A;CL |
Significance: 0.00902908 | Absent |
| DP3b;A;CL |
Significance: 0.00317992 | Absent |
| ISP;A;CL |
Significance: 0.0363665 | Absent |
| ES;MEF;A;CL |
Significance: 0.000729783 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.0022811 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.00452764 | Absent |
| LNG;A;CL |
Significance: 0.00219013 | Absent |
| Heart;D;En |
Significance: 0.00461825 | Absent |
| Mammary;A;CL |
Significance: 0.00432333 | Absent |
| Adrenal;A;CL |
Significance: 0.00183734 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.0164728 | Absent |
| STMCH;A;CL |
Significance: 0.0548462 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.013909 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.00177138 | Absent |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.00463683 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.00521317 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.0125308 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00554647 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.00537452 | Absent |
| restingB;A;CL |
Significance: 0.0406728 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.0106555 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.00196197 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.00574927 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.054945600000000004 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.0166785 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.035437800000000005 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.0184233 | Absent |
| ILC1;A;CL |
Significance: 0.047313 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00781046 | Absent |
| ILC2;A;CL |
Significance: 0.038758999999999995 | Absent |
| CLP;A;CL |
Significance: 0.0120766 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0174578 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.00448549 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00160849 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.00226502 | Absent |
| ILC1;A;GEO |
Significance: 0.00705268 | Absent |
| ILC2;A;GEO |
Significance: 0.0179935 | Absent |
| ILC3;A;GEO |
Significance: 0.00975284 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0455959 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.050273000000000005 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.00487058 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0549928 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0458125 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.00781267 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.05184540000000001 | Absent |
| preB_BMD;A;GEO |
Significance: 0.0125166 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.0448003 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.0355233 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.023234400000000002 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.0341662 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.0027792 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0208652 | Absent |
| NPC;F129;A;GEO |
Significance: 0.0104822 | Absent |
| NPC;G4;A;GEO |
Significance: 0.00204573 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.0045509999999999995 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.00624277 | Absent |
| ePyramidal_NRN;A;GEO |
Significance: 0.00481392 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.00210709 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.00227214 | Absent |
| eCortical_NRN;A;GEO |
Significance: 0.00728285 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.00284289 | Absent |
| Corticotrope;A;GEO |
Significance: 0.00842888 | Absent |
| Melanotrope;A;GEO |
Significance: 0.00462205 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.00499016 | Absent |
| EPP;A;En |
Significance: 0.0336467 | Absent |
| MegEP;A;CL |
Significance: 0.00125861 | Absent |
| pErythroblast;A;En |
Significance: 0.00534605 | Absent |
| MegP;A;En |
Significance: 0.00582327 | Absent |
| pCMP;A;CL |
Significance: 0.00559237 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.0419189 | Absent |
| DC;A;En |
Significance: 0.0484954 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.0175673 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.0030294000000000002 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.0201804 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.00293465 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.00205004 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0230456 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.057811699999999994 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.030813599999999997 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 8.7031e-05 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.0591011 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.0139762 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.00122452 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0038405 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.00512701 | Absent |
| KDNY;P0;D;En |
Significance: 2.76801e-08 | Absent |
| KDNY;8wks;D;En |
Significance: 0.00334214 | Absent |
| LVR;8wks;D;En |
Significance: 0.00191507 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.0100704 | Absent |
| LVR;P0;D;En |
Significance: 0.00393057 | Absent |
| LNG;8wks;D;En |
Significance: 0.00374178 | Absent |
| LNG;P0;D;En |
Significance: 0.000593311 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.00221569 | Absent |
| Heart;8wks;D;En |
Significance: 0.00819172 | Absent |
| Heart;P0;D;En |
Significance: 0.0342168 | Absent |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.0445461 | Absent |
| Adipose;D;En |
Significance: 0.000976947 | Absent |
| RTN;D1;D;En |
Significance: 0.00940451 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.0361895 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.012439299999999999 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.00767639 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0250762 | Absent |
| Muller;P12;D;En |
Significance: 0.00190093 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.000150946 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.00951943 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.018287 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.00322672 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.029105799999999998 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.00612709 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.00468583 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.00582447 | Absent |
| wES;limb;E14.5;D;En |
Significance: 0.018938800000000002 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.0036268 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.015100899999999999 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00213762 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.000225091 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.0037984000000000004 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0169358 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.00190922 | Absent |
| STMCH;P0;D;En |
Significance: 0.0008554519999999999 | Absent |
| Spleen;8wks;D;En |
Significance: 0.000329892 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.00112106 | Absent |
| AML;D;En |
Significance: 0.025672800000000003 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.00468584 | Absent |
| MEL;D;En |
Significance: 0.000459416 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.003827 | Absent |
| NIH3T3;D;En |
Significance: 0.030122900000000005 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.002562 | Absent |
| MN1;D;En |
Significance: 0.00651869 | Absent |
| 3T3-L1;D;En |
Significance: 0.00543695 | Absent |
