# Parameters
data_name = "Hoxb5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:38,186 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxb5: Motif: M00480_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxb5: #17

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.000848428 / Pattern: metacluster_0/pattern_5 Significance: 0.0554862	Pattern: motif4.motif Significance: 0.0373674 / Pattern: motif8.motif Significance: 0.00431485
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.03483680000000001 / Pattern: metacluster_0/pattern_3 Significance: 0.00046537099999999996	Pattern: motif3.motif Significance: 0.0246217 / Pattern: motif5.motif Significance: 0.043631699999999995
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_8 Significance: 0.0217888	Pattern: motif3.motif Significance: 0.026474
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0081976	Pattern: motif9.motif Significance: 0.0123983
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0160309	Pattern: motif6.motif Significance: 0.0194594
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00474508	Pattern: motif2.motif Significance: 0.00850396
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00429423	Pattern: motif3.motif Significance: 0.00754298
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.038613	Pattern: motif3.motif Significance: 0.019040900000000003
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.0105555	Pattern: motif13.motif Significance: 0.0193937
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.00943949	Pattern: motif4.motif Significance: 0.0320576
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.00481806	Pattern: motif2.motif Significance: 0.00698119
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.00500378	Pattern: motif2.motif Significance: 0.00703924
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.011554799999999999	Pattern: motif14.motif Significance: 0.0104446
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_18 Significance: 0.055987199999999994	Pattern: motif13.motif Significance: 0.0251196
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.008165100000000002	Pattern: motif6.motif Significance: 0.0189803
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0567153	Pattern: motif16.motif Significance: 0.0294968
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.00371587	Pattern: motif2.motif Significance: 0.00635136

Unique Cell types only TF-MoDISco finds Hoxb5: #11

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.014709299999999998	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.05959400000000001	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.000917315	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.00486431	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 5.061830000000001e-06	Absent
iPV_NRN;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.033007199999999993	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 5.2466800000000004e-05	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.020115099999999997	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.015967099999999998	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.012552299999999999	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.00995462	Absent

Unique Cell types only Homer finds Hoxb5: #7

Cell type	Modisco	Homer
LRG_INTSTN;8wks;D;En	Absent	Pattern: motif4.motif Significance: 0.013079399999999998
wES.CRNL_NRL_CRST;E10.5;A;GEO	Absent	Pattern: motif3.motif Significance: 0.0453179
SML_INTSTN;A;CL	Absent	Pattern: motif3.motif Significance: 0.020669200000000002
Melanotrope;A;GEO	Absent	Pattern: motif17.motif Significance: 0.0212922
Fr_BRN;P0;D;En	Absent	Pattern: motif10.motif Significance: 0.0303208
CN_PHT_RCPTR;A;GEO	Absent	Pattern: motif8.motif Significance: 0.0234943
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.00611869