# Parameters
data_name = "Foxj1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:48,828 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Foxj1: Motif: M00161_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxj1: #4

Cell type	Modisco	Homer
STMCH;P0;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0214116	Pattern: motif3.motif Significance: 0.0212503
LVR;8wks;D;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.0194238	Pattern: motif4.motif Significance: 0.029557599999999996
LNG;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.012490000000000001	Pattern: motif5.motif Significance: 0.05794680000000001
wES;LNG;E14.5;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.00452739	Pattern: motif11.motif Significance: 0.03981319999999999

Unique Cell types only TF-MoDISco finds Foxj1: #27

Cell type	Modisco	Homer
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_23 Significance: 0.000584177	Absent
wES;NRL_Tube;E11.5;D;En	Pattern: metacluster_1/pattern_23 Significance: 0.0045473	Absent
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00225349	Absent
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.0195602	Absent
3134_mammaryADNCRCNM;D;GE	Pattern: metacluster_1/pattern_18 Significance: 0.00310083 / Pattern: metacluster_1/pattern_21 Significance: 0.0469786	Absent
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0215987	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.00216814	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.000797072	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.0010812999999999999	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00109939	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.000834193	Absent
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.000883757	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.000989537	Absent
KDNY;P0;D;En	Pattern: metacluster_1/pattern_7 Significance: 0.00248067	Absent
LVR;8wks;D;En	Pattern: metacluster_0/pattern_13 Significance: 0.0365806 / Pattern: metacluster_0/pattern_14 Significance: 0.0588259	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_23 Significance: 0.0008590160000000001	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.000715916	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00582837	Absent
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_22 Significance: 0.00321865	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00581892	Absent
LVR;P0;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.0259017	Absent
LNG;8wks;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0345358	Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.0039775999999999995	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.0212217	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.00165996	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_23 Significance: 0.03962430000000001	Absent
placenta;A;CL	Pattern: metacluster_0/pattern_23 Significance: 0.031791700000000006	Absent

No Cell types only Homer finds Foxj1