# Parameters
data_name = "Nkx2-3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:10,070 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Nkx2-3: Motif: M00497_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nkx2-3: #1

Cell type	Modisco	Homer
LNG;8wks;D;En	Pattern: metacluster_0/pattern_9 Significance: 0.000810712	Pattern: motif4.motif Significance: 0.000480866

Unique Cell types only TF-MoDISco finds Nkx2-3: #10

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.028588	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.024980099999999998	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0392415	Absent
LNG;P0;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.000216567	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.028316	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0591143	Absent
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.000920108	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.058830999999999994	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.038288	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0395272	Absent

Unique Cell types only Homer finds Nkx2-3: #1

Cell type	Modisco	Homer
iVIP_NRN;A;GEO	Absent	Pattern: motif3.motif Significance: 0.053489999999999996