# Parameters
data_name = "Jund"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:15:11,181 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
memT;CD4+;A;CL |
Significance: 0.0535105 |
Significance: 0.034753 |
Th17;CD4+;A;CL |
Significance: 0.00225554 |
Significance: 0.0045239 |
aB_LPS+IL21;A;CL |
Significance: 0.00438743 |
Significance: 0.049055 |
BSPHL;A;CL |
Significance: 0.014418700000000001 |
Significance: 0.00735854 |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0398421 |
Significance: 0.012681200000000002 |
NTRPHL;A;CL |
Significance: 0.042917500000000004 |
Significance: 0.03967 |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00229913 |
Significance: 0.00799224 |
DC_BMD;A;CL |
Significance: 0.00803454 |
Significance: 0.00152527 |
MCRPHG;A;CL |
Significance: 0.009759499999999999 |
Significance: 0.0211252 |
Erythroblast;A;CL |
Significance: 0.0564226 |
Significance: 0.05952230000000001 |
ES;MEF;A;CL |
Significance: 0.00255067 |
Significance: 0.0206944 |
SML_INTSTN;A;CL |
Significance: 0.00566903 |
Significance: 0.0164428 |
Heart;D;En |
Significance: 0.00898643 |
Significance: 0.00665312 |
Adrenal;A;CL |
Significance: 0.00246666 |
Significance: 0.00689105 |
placenta;A;CL |
Significance: 0.00775674 |
Significance: 0.0010136000000000001 |
BRN;OLFTRY_BLB;A;CL |
Significance: 0.00304844 |
Significance: 0.015099200000000002 |
BRN;FRNTL_CRTX;A;CL |
Significance: 0.0051825000000000005 |
Significance: 0.00113737 |
BRN;PTMN;A;CL |
Significance: 0.00235174 |
Significance: 0.0292976 |
BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0034794000000000005 |
Significance: 0.00283272 |
gamma_delta_TCR;A;CL |
Significance: 0.00531338 |
Significance: 0.012465100000000002 |
gamma_delta_TCR_MCR;A;CL |
Significance: 0.00304517 |
Significance: 0.0123439 |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.029168200000000002 |
Significance: 0.0476754 |
NK;IL2+IL12+;A;CL |
Significance: 0.014666299999999998 |
Significance: 0.013345500000000001 |
NCR+ILC3;A;CL |
Significance: 0.00786465 |
Significance: 0.014399200000000003 |
ILC2_Nippo;A;CL |
Significance: 0.00295039 |
Significance: 0.0249606 |
NCR+ILC3+IL23;A;CL |
Significance: 0.00181129 |
Significance: 0.0307055 |
ILC2;A;CL |
Significance: 0.0515649 |
Significance: 0.0463656 |
Th2_nippo;A;CL |
Significance: 0.0012747 |
Significance: 0.00802981 |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0423099 |
Significance: 0.00469658 |
wCH12_drug;A;CL |
Significance: 0.0502179 |
Significance: 0.00599157 |
ES;v6.5;A;GEO |
Significance: 0.014021 |
Significance: 0.0247801 |
Mammary_GLND;A;GEO |
Significance: 0.00545968 |
Significance: 0.0214941 |
ILC2+IL33+IL25;A;GEO |
Significance: 0.00892999 |
Significance: 0.00810482 |
ILC1;A;GEO |
Significance: 0.00252252 |
Significance: 0.015693600000000002 |
ILC2;A;GEO |
Significance: 0.0242779 |
Significance: 0.025037 |
ILC3;A;GEO |
Significance: 0.0164466 |
Significance: 0.0185098 |
ILC1_AbxGRMFree;A;GEO |
Significance: 0.037525300000000004 |
Significance: 0.0425927 |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.0127435 |
Significance: 0.0311221 |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.043613099999999995 |
Significance: 0.0152583 |
TSLEC_SPLND;CD8+A;GEO |
Significance: 0.00684832 |
Significance: 0.010960600000000001 |
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.00645645 |
Significance: 0.0226507 |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00452007 |
Significance: 0.00282721 |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00621199 |
Significance: 0.016078 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00233533 |
Significance: 0.00128179 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.040204000000000004 |
Significance: 0.0163414 |
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00362965 |
Significance: 0.0138969 |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00349553 |
Significance: 0.0165759 |
aB;A;GEO |
Significance: 0.0464326 |
Significance: 0.056026 |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00800408 |
Significance: 0.00130931 |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00495951 |
Significance: 0.00767493 |
Erythroid;Ter119+;A;GEO |
Significance: 0.025623900000000005 |
Significance: 0.045133 |
AML;AE9a;A;GEO |
Significance: 0.0574342 |
Significance: 0.0463571 |
DC_LPS;6h;A;GEO |
Significance: 0.00421756 |
Significance: 0.014542700000000002 |
DC_LPS;2h;A;GEO |
Significance: 0.00568924 |
Significance: 0.00646661 |
DC_pBMD;A;GEO |
Significance: 0.008937299999999999 |
Significance: 0.0020114 |
SKN_EPTHL;A;GEO |
Significance: 0.00566585 |
Significance: 0.0423949 |
BCK_SKN;A;GEO |
Significance: 0.00210689 |
Significance: 0.0153209 |
ePyramidal_NRN;A;GEO |
Significance: 0.00242486 |
Significance: 0.012798299999999999 |
iPV_NRN;A;GEO |
Significance: 0.00766929 |
Significance: 0.018055099999999998 |
eCortical_NRN;A;GEO |
Significance: 0.00314657 |
Significance: 0.021281599999999998 |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.0380884 |
Significance: 0.0122199 |
Corticotrope;A;GEO |
Significance: 0.00978573 |
Significance: 0.034403500000000004 |
Melanotrope;A;GEO |
Significance: 0.00457666 |
Significance: 0.0549645 |
Mammary_BptfKO;A;GEO |
Significance: 0.00678771 |
Significance: 0.031390499999999995 |
pMeg;A;En |
Significance: 0.0369801 |
Significance: 0.0462267 |
EPP;A;En |
Significance: 0.0567994 |
Significance: 0.054315800000000004 |
pErythroblast;A;En |
Significance: 0.0596297 |
Significance: 0.059730200000000004 |
MegP;A;En |
Significance: 0.0551501 |
Significance: 0.0223513 |
pCMP;A;CL |
Significance: 0.054766199999999994 |
Significance: 0.0486199 |
DC_LPS;4h;A;En |
Significance: 0.00816864 |
Significance: 0.00150739 |
DC;A;En |
Significance: 0.00904024 |
Significance: 0.010811200000000002 |
ES;ZhBTc4;1;D;GEO |
Significance: 0.046470599999999994 |
Significance: 0.0449077 |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.00864106 |
Significance: 0.0110146 |
LNG;8wks;D;GEO |
Significance: 0.0394852 |
Significance: 0.013906 |
3134_mammaryADNCRCNM;D;GE |
Significance: 0.00557661 |
Significance: 0.0331476 |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00380986 |
Significance: 0.0006778239999999999 |
416B_MP;CD34+;D;GEO |
Significance: 0.0122491 |
Significance: 0.00531703 |
WHL_BRN;8wks;D;GEO |
Significance: 0.00222245 |
Significance: 0.00800257 |
NIH3T3_FBROBLST;D;En |
Significance: 0.00565522 |
Significance: 0.0210605 |
FBRBLST;8wks;D;En |
Significance: 0.0039569 |
Significance: 0.0135841 |
3T3-L1;FBRBLST;D;En |
Significance: 0.0029704 |
Significance: 0.00890333 |
wES;LVR;E11.5;D.;En |
Significance: 0.039625400000000005 |
Significance: 0.0427796 |
LNG;8wks;D;En |
Significance: 0.018832400000000003 |
Significance: 0.051365 |
LNG;P0;D;En |
Significance: 0.0233113 |
Significance: 0.028493 |
Heart;P0;D;En |
Significance: 0.0372639 |
Significance: 0.0414968 |
Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.0122411 |
Significance: 0.0374101 |
Adipose;D;En |
Significance: 0.0012355 |
Significance: 0.026350099999999998 |
EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.054640999999999995 |
Significance: 0.0212708 |
416B_MP;CD34+;D;En |
Significance: 0.0199479 |
Significance: 0.0090368 |
Muller;P12;D;En |
Significance: 0.00374844 |
Significance: 0.00692407 |
WHL_BRN;8wks;D;En |
Significance: 0.00318834 |
Significance: 0.015303299999999999 |
wES;Telenchephalon;D;En |
Significance: 0.00193476 |
Significance: 0.0211248 |
LRG_INTSTN;8wks;D;En |
Significance: 0.00275333 |
Significance: 0.0444439 |
STMCH;P0;D;En |
Significance: 0.0470538 |
Significance: 0.0176237 |
SKLTL_Muscle;8wks;D;En |
Significance: 0.0117094 |
Significance: 0.0525105 |
3134_mammaryADNCRCNM;D;En |
Significance: 0.009177600000000001 |
Significance: 0.0046503000000000004 |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.0176826 |
Significance: 0.0243771 |
AML;D;En |
Significance: 0.032719599999999995 |
Significance: 0.0248347 |
CH12.LX;D;En |
Significance: 0.023704 |
Significance: 0.00256943 |
MEF.GATA-1-ER;D;En |
Significance: 0.0562132 |
Significance: 0.0477769 |
MEL;D;En |
Significance: 0.0348107 |
Significance: 0.00143485 |
NIH3T3;D;En |
Significance: 0.011851700000000001 |
Significance: 0.00853422 |
MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00277954 |
Significance: 0.0327669 |
MN1;D;En |
Significance: 0.0100447 |
Significance: 0.040711000000000004 |
3T3-L1;D;En |
Significance: 0.00607834 |
Significance: 0.013006499999999999 |
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 0.0535415 | Absent |
naiveCD8;A;CL |
Significance: 0.027901799999999997 | Absent |
NK_SPLND;A;CL |
Significance: 0.00410161 | Absent |
proB;A;CL |
Significance: 0.0496321 | Absent |
matureB;A;CL |
Significance: 0.0153828 | Absent |
B1_B;A;CL |
Significance: 0.00883295 | Absent |
plasmaB;A;CL |
Significance: 0.0175667 | Absent |
aB_LPS;A;CL |
Significance: 0.00852195 | Absent |
aB_LPS+IL4;A;CL |
Significance: 0.00316012 | Absent |
aB_LSP+a_d_dextran;A;CL |
Significance: 0.00528701 | Absent |
aB_CD40+IL4;A;CL |
Significance: 0.0339865 | Absent |
Mast;A;CL |
Significance: 0.0415596 | Absent |
ESNPHL_SPLND_BlbCA;CL |
Significance: 0.027068900000000003 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.00820987 | Absent |
Tfh;A;CL |
Significance: 0.00230321 | Absent |
Tfh_mut;A;CL |
Significance: 0.014669799999999998 | Absent |
aNonTfh;A;CL |
Significance: 0.0044115000000000005 | Absent |
aNonTfh_mut;A;CL |
Significance: 0.00469556 | Absent |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00245566 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.040293800000000005 | Absent |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00335524 | Absent |
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0376374 | Absent |
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.016026 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0107285 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00511326 | Absent |
CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.00347307 | Absent |
DP;A;CL |
Significance: 0.00807645 | Absent |
DP3a;A;CL |
Significance: 0.054686900000000004 | Absent |
ES;E14;A;CL |
Significance: 0.057248099999999996 | Absent |
LRG_INTSTN;A;CL |
Significance: 0.0468561 | Absent |
LNG;A;CL |
Significance: 0.024821 | Absent |
Muscle;A;CL |
Significance: 0.00168192 | Absent |
Adipose;A;CL |
Significance: 0.00462104 | Absent |
Mammary;A;CL |
Significance: 0.005806100000000001 | Absent |
testis;A;CL |
Significance: 0.0456075 | Absent |
STMCH;A;CL |
Significance: 0.0326368 | Absent |
PNCRS;A;CL |
Significance: 0.00729057 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.0205103 | Absent |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.021155900000000002 | Absent |
BRN;CRBLM;A;CL |
Significance: 0.030885500000000003 | Absent |
aB;CD180;A;CL |
Significance: 0.0057748 | Absent |
LNG_TRM_HSC;A;CL |
Significance: 0.0411055 | Absent |
SHRT_TRM_HSC;A;CL |
Significance: 0.059112 | Absent |
ILC2precrsr;A;CL |
Significance: 0.026554599999999998 | Absent |
ILC1;A;CL |
Significance: 0.00879183 | Absent |
aB_LPS+IL4_24h;A;CL |
Significance: 0.00219763 | Absent |
CH12_QNTPLE;A;CL |
Significance: 0.016957299999999998 | Absent |
wCH12;A;CL |
Significance: 0.00385892 | Absent |
CH12;med14;A;CL |
Significance: 0.00306481 | Absent |
CLP;A;CL |
Significance: 0.0197725 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.00455773 | Absent |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.00667322 | Absent |
NTRPHL;A;GEO |
Significance: 0.0364758 | Absent |
ES;J1;A;CL |
Significance: 0.0542193 | Absent |
ES;E14;A;GEO |
Significance: 0.004307 | Absent |
ES;F1216;A;GEO |
Significance: 0.022572799999999997 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.038199300000000005 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00430027 | Absent |
ILC2_AbxGRMFree;A;GEO |
Significance: 0.006743600000000001 | Absent |
naiveT;CD8+;A;GEO |
Significance: 0.00736945 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.00473048 | Absent |
T_LCMV;CD8+;D33;A;GEO |
Significance: 0.00334913 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 0.00381281 | Absent |
TExh_SPLND;CD8+;A;GEO |
Significance: 0.00232837 | Absent |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00440176 | Absent |
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.00454298 | Absent |
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.00401786 | Absent |
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.00657648 | Absent |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.00264543 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.00671024 | Absent |
iNKT;A;GEO |
Significance: 0.013240700000000001 | Absent |
prePLSM_B;A;GEO |
Significance: 0.00676173 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.041736199999999994 | Absent |
ENDRM_ESD;A;GEO |
Significance: 0.0189883 | Absent |
GCN_PHT_RCPTR;A;GEO |
Significance: 0.007265300000000001 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.015577700000000002 | Absent |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.059170299999999995 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.026530599999999998 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0309668 | Absent |
NPC;F129;A;GEO |
Significance: 0.00936751 | Absent |
NPC;G4;A;GEO |
Significance: 0.0145734 | Absent |
NPC;Ch13;A;GEO |
Significance: 0.00442615 | Absent |
NPC;mE6;A;GEO |
Significance: 0.014284799999999999 | Absent |
iVIP_NRN;A;GEO |
Significance: 0.00197245 | Absent |
G_NRN_P;A;GEO |
Significance: 0.0550799 | Absent |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.055836000000000004 | Absent |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.0314548 | Absent |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.030715199999999998 | Absent |
ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0549555 | Absent |
ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0386383 | Absent |
MegEP;A;CL |
Significance: 0.0557845 | Absent |
pGMP;A;En |
Significance: 0.0456198 | Absent |
ES;ZhBTc4;2;D;GEO |
Significance: 0.057382100000000005 | Absent |
ES;D0;D;GEO |
Significance: 0.046863699999999994 | Absent |
LVR;8wks;D;GEO |
Significance: 0.014684200000000001 | Absent |
naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0559515 | Absent |
apCD4Eff;D;GEO |
Significance: 0.00224014 | Absent |
apTreg;D;GEO |
Significance: 0.00394352 | Absent |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.0506967 | Absent |
ES;E14;D;En |
Significance: 0.0522046 | Absent |
ES;C57BL_6J;R1;D;En |
Significance: 0.0546552 | Absent |
KDNY;P0;D;En |
Significance: 0.027496299999999998 | Absent |
KDNY;8wks;D;En |
Significance: 0.0133267 | Absent |
LVR;8wks;D;En |
Significance: 0.05619980000000001 | Absent |
LVR;P0;D;En |
Significance: 0.027475 | Absent |
wES;LNG;E14.5;D;En |
Significance: 0.00875391 | Absent |
Heart;8wks;D;En |
Significance: 0.0480343 | Absent |
RTN;D1;D;En |
Significance: 0.0131753 | Absent |
CRBLM;D;En |
Significance: 0.00997735 | Absent |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00215772 | Absent |
Fr_BRN;P0;D;En |
Significance: 0.00424161 | Absent |
Hnd_BRN;P0;D;En |
Significance: 0.0282731 | Absent |
wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0587004 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.0392664 | Absent |
Spleen;8wks;D;En |
Significance: 0.0152507 | Absent |
MEL_Znc_di-cl;24h;D;En |
Significance: 0.033958800000000004 | Absent |
Cell type | Modisco | Homer |
---|---|---|
restingB;A;CL | Absent |
Significance: 0.0437385 |