In [1]:
# Parameters
data_name = "Foxj3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:56,878 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxj3: Motif: M03057_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxj3: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.015659

Pattern: motif9.motif

Significance: 0.04649280000000001

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0305683

Pattern: motif15.motif

Significance: 0.0360064

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0454304

Pattern: motif16.motif

Significance: 0.047843199999999995

LVR;8wks;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.0568601

/

Pattern: metacluster_0/pattern_14

Significance: 0.0588259

Pattern: motif7.motif

Significance: 0.028631099999999996

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0277503

Pattern: motif5.motif

Significance: 0.0204439

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0434505

/

Pattern: metacluster_0/pattern_10

Significance: 0.024568400000000004

Pattern: motif15.motif

Significance: 0.0235521

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.033816000000000006

Pattern: motif11.motif

Significance: 0.03981319999999999

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0174

Pattern: motif3.motif

Significance: 0.03182

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.050611800000000005

Pattern: motif5.motif

Significance: 0.033660199999999994

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0189748

Pattern: motif15.motif

Significance: 0.0575928

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0159776

Pattern: motif16.motif

Significance: 0.037080199999999994

Unique Cell types only TF-MoDISco finds Foxj3: #24

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.0160072

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.0102601

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0221129

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0428237

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0396995

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.05075

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.0318723

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.053970000000000004

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0009953289999999999

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0451207

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.015330700000000001

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_22

Significance: 0.04721090000000001

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.0305066

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.0501576

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.010531299999999999

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.05618530000000001

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0185281

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00432285

/

Pattern: metacluster_1/pattern_21

Significance: 0.0545326

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.052834000000000006

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.0168675

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0156793

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0457196

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0212217

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.025343099999999997

Absent
Unique Cell types only Homer finds Foxj3: #1

Cell typeModiscoHomer
ThMS_MEC;Aire++;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.024329