In [1]:
# Parameters
data_name = "Phox2a"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:27:45,561 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Phox2a: Motif: M09564_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Phox2a: #22

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00967866

Pattern: motif4.motif

Significance: 0.029560500000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00503202

Pattern: motif3.motif

Significance: 0.0182547

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0517518

Pattern: motif14.motif

Significance: 0.022596599999999998

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 6.906949999999999e-05

Pattern: motif6.motif

Significance: 8.49364e-09

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 1.69528e-05

Pattern: motif9.motif

Significance: 2.07091e-08

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.017357400000000002

Pattern: motif13.motif

Significance: 0.008159399999999999

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013031899999999999

Pattern: motif16.motif

Significance: 0.00986466

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00671427

Pattern: motif9.motif

Significance: 0.042869

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.043206699999999994

Pattern: motif3.motif

Significance: 0.00970448

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00932764

Pattern: motif13.motif

Significance: 0.044123

Melanotrope;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.05850930000000001

Pattern: motif17.motif

Significance: 0.0429916

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.006379999999999999

Pattern: motif2.motif

Significance: 0.053382000000000006

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00996102

Pattern: motif6.motif

Significance: 0.00963601

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00474508

Pattern: motif2.motif

Significance: 0.0268061

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00418369

Pattern: motif3.motif

Significance: 0.0480465

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00495695

Pattern: motif4.motif

Significance: 0.022711099999999998

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00583954

Pattern: motif2.motif

Significance: 0.0352108

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0076155

Pattern: motif10.motif

Significance: 0.010184700000000001

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00362623

Pattern: motif3.motif

Significance: 0.012832299999999998

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00505036

Pattern: motif6.motif

Significance: 0.0118259

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.016370600000000003

Pattern: motif14.motif

Significance: 0.017439

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00797938

Pattern: motif2.motif

Significance: 0.0440661

Unique Cell types only TF-MoDISco finds Phox2a: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.031057599999999998

/

Pattern: metacluster_0/pattern_25

Significance: 0.0214523

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00837683

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00566997

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0222448

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.011668600000000001

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0434505

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0130035

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0460386

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0376209

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.043975099999999996

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00960556

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.013017500000000001

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00754535

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00848058

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0325125

Absent
Unique Cell types only Homer finds Phox2a: #3

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0514337

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0091262

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.03359430000000001