# Parameters
data_name = "Stat4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Stat4: #9
| Cell type | Modisco | Homer |
|---|---|---|
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.017274099999999997 |
Significance: 0.055097 |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.0204018 |
Significance: 0.0435726 |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.047655 |
Significance: 0.0473332 |
| ILC3;A;GEO |
Significance: 0.058919900000000004 |
Significance: 0.0410841 |
| DP3a;A;CL |
Significance: 0.024036099999999998 |
Significance: 0.0299041 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00892817 |
Significance: 0.0515709 |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.0383115 |
Significance: 0.0382579 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00886224 |
Significance: 0.0318289 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.015125799999999998 |
Significance: 0.057688300000000005 |
Unique Cell types only TF-MoDISco finds Stat4: #63
| Cell type | Modisco | Homer |
|---|---|---|
| matureB;A;CL |
Significance: 0.0437953 | Absent |
| Mast;A;CL |
Significance: 0.0262289 | Absent |
| BSPHL;A;CL |
Significance: 0.00729587 | Absent |
| Tfh;A;CL |
Significance: 0.0289007 | Absent |
| aNonTfh;A;CL |
Significance: 0.0508471 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.058782799999999996 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.050393400000000005 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0366431 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0241583 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.015402899999999999 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.050425199999999996 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.028903199999999997 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0551677 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0159183 | Absent |
| DP;A;CL |
Significance: 0.035203899999999996 | Absent |
| DP3b;A;CL |
Significance: 0.0236425 | Absent |
| ES;MEF;A;CL |
Significance: 0.0373015 | Absent |
| Heart;D;En |
Significance: 0.018543599999999997 | Absent |
| Adipose;A;CL |
Significance: 0.0235871 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.0517597 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.0564643 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.015743700000000003 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.017861000000000002 | Absent |
| ILC1;A;CL |
Significance: 0.0203426 | Absent |
| Th2_nippo;A;CL |
Significance: 0.0375035 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.044368300000000006 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0236115 | Absent |
| ILC1;A;GEO |
Significance: 0.0113845 | Absent |
| ILC2;A;GEO |
Significance: 0.0560784 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0446723 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.00751688 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.0174333 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.0139548 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0402973 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0197984 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.017229400000000002 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.0162674 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0154463 | Absent |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.022228499999999998 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0148659 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0186593 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00927477 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0202011 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0170424 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0223072 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0220198 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0135201 | Absent |
| iNKT;A;GEO |
Significance: 0.011547499999999999 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.033474800000000006 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0571293 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.050052 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.048925199999999995 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.0322322 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.050376300000000006 | Absent |
| NPC;G4;A;GEO |
Significance: 0.050950300000000004 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.040038 | Absent |
| Melanotrope;A;GEO |
Significance: 0.0562398 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0422847 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.025036000000000003 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0178061 | Absent |
| ES;E14;D;En |
Significance: 0.05489730000000001 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.013527899999999999 | Absent |
| apTreg;8wk;D;En |
Significance: 0.0201183 | Absent |
Unique Cell types only Homer finds Stat4: #7
| Cell type | Modisco | Homer |
|---|---|---|
| LNG;8wks;D;En | Absent |
Significance: 0.056963599999999996 |
| ES;v6.5;A;GEO | Absent |
Significance: 0.0416286 |
| ILC2+IL33+IL25;A;GEO | Absent |
Significance: 0.0551371 |
| T_SPLND_blstCLTRD;CD4+;D;GEO | Absent |
Significance: 0.056862 |
| EP;c-kit+CD71+Ter119+;D;En | Absent |
Significance: 0.040168300000000004 |
| MN1;D;En | Absent |
Significance: 0.0274616 |
| EPP;A;En | Absent |
Significance: 0.045145199999999996 |
