In [1]:
# Parameters
data_name = "Meox1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:19:53,260 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Meox1: Motif: M00384_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Meox1: #17

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00160685

Pattern: motif8.motif

Significance: 0.0211546

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00147156

Pattern: motif3.motif

Significance: 0.04107430000000001

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0286375

Pattern: motif3.motif

Significance: 0.024549900000000003

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00791259

Pattern: motif9.motif

Significance: 0.00969428

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0160309

Pattern: motif6.motif

Significance: 0.0493566

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00755604

Pattern: motif2.motif

Significance: 0.0164743

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00579726

Pattern: motif3.motif

Significance: 0.0174235

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.035117699999999995

Pattern: motif3.motif

Significance: 0.0198388

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.011067299999999999

Pattern: motif13.motif

Significance: 0.016236700000000003

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.014593700000000001

Pattern: motif4.motif

Significance: 0.0149477

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.006379999999999999

Pattern: motif2.motif

Significance: 0.022199200000000002

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00442223

Pattern: motif2.motif

Significance: 0.0192976

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0594159

Pattern: motif10.motif

Significance: 0.0414295

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0505043

Pattern: motif13.motif

Significance: 0.026374

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00922464

Pattern: motif6.motif

Significance: 0.041960199999999996

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00918597

Pattern: motif14.motif

Significance: 0.0181336

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00442683

Pattern: motif2.motif

Significance: 0.0232125

Unique Cell types only TF-MoDISco finds Meox1: #12

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.039114499999999996

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0472024

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00239852

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0144929

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.000223749

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0293974

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00114318

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.0476761

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0190759

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.024095699999999998

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0325125

Absent
Unique Cell types only Homer finds Meox1: #5

Cell typeModiscoHomer
LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.03346969999999999

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0143126

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.026439599999999997

wES;3rd_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif16.motif

Significance: 0.029001299999999997

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0206842