In [1]:
# Parameters
data_name = "Lyl1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:18:26,153 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Lyl1: Motif: M08763_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Lyl1: #30

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00659028

Pattern: motif12.motif

Significance: 0.052213999999999997

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.014949700000000002

Pattern: motif6.motif

Significance: 0.0464545

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.017175299999999998

Pattern: motif5.motif

Significance: 0.00149561

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00549987

Pattern: motif15.motif

Significance: 0.0523702

preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00984321

Pattern: motif12.motif

Significance: 0.05362130000000001

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 9.95487e-06

Pattern: motif15.motif

Significance: 0.0241832

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0255789

Pattern: motif10.motif

Significance: 0.00943015

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.00046822199999999996

/

Pattern: metacluster_1/pattern_21

Significance: 7.01837e-05

Pattern: motif22.motif

Significance: 0.037337999999999996

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00490017

Pattern: motif9.motif

Significance: 0.052734800000000005

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.013532299999999997

/

Pattern: metacluster_1/pattern_18

Significance: 0.000534843

Pattern: motif11.motif

Significance: 0.0177926

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0363287

Pattern: motif10.motif

Significance: 0.0366819

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00864332

Pattern: motif9.motif

Significance: 0.0140197

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0101383

Pattern: motif11.motif

Significance: 0.0599058

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00927969

Pattern: motif4.motif

Significance: 0.00365887

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.000247871

Pattern: motif13.motif

Significance: 0.020553000000000002

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.00369186

Pattern: motif15.motif

Significance: 0.00211887

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.00365897

Pattern: motif7.motif

Significance: 0.00437965

BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.030956599999999997

Pattern: motif7.motif

Significance: 0.042650400000000005

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00579267

/

Pattern: metacluster_1/pattern_10

Significance: 0.00933264

Pattern: motif2.motif

Significance: 0.029045799999999997

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.000398465

Pattern: motif13.motif

Significance: 0.0407228

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0156661

Pattern: motif15.motif

Significance: 0.012916299999999999

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 3.09398e-05

Pattern: motif18.motif

Significance: 0.010174299999999999

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00012138700000000001

Pattern: motif13.motif

Significance: 0.0037702

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 5.58507e-05

Pattern: motif2.motif

Significance: 0.00314212

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00311024

Pattern: motif16.motif

Significance: 0.016916099999999996

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00026063

Pattern: motif4.motif

Significance: 0.00737829

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00382625

Pattern: motif11.motif

Significance: 0.012615399999999999

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00633342

/

Pattern: metacluster_1/pattern_15

Significance: 0.00254969

Pattern: motif7.motif

Significance: 0.019303900000000002

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.000160766

Pattern: motif8.motif

Significance: 0.0206831

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00705819

Pattern: motif19.motif

Significance: 0.0373476

Unique Cell types only TF-MoDISco finds Lyl1: #35

Cell typeModiscoHomer
B1_B;A;CL

Pattern: metacluster_1/pattern_18

Significance: 4.34358e-06

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00553187

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0151298

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0431734

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.021256200000000003

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00159898

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00200356

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 8.904440000000001e-05

/

Pattern: metacluster_0/pattern_22

Significance: 0.00246937

/

Pattern: metacluster_0/pattern_24

Significance: 0.0356286

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0020442999999999998

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.026933699999999998

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.000461543

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 2.66065e-05

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.000137197

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 8.36692e-05

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.000491845

Absent
ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00618693

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0261293

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.000389168

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.025584299999999997

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 9.35534e-05

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.00909996

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.039289300000000006

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.057842399999999995

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.000216491

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0114209

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0147593

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 9.055229999999999e-05

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.021581799999999998

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 8.70693e-05

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0482095

/

Pattern: metacluster_0/pattern_12

Significance: 0.00807799

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.016790700000000002

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00560881

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0394226

/

Pattern: metacluster_1/pattern_6

Significance: 0.00564227

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00841069

/

Pattern: metacluster_1/pattern_11

Significance: 0.0322955

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00705397

Absent
Unique Cell types only Homer finds Lyl1: #5

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.00134148

wES;FaceP;E11.5;D;EnAbsent

Pattern: motif7.motif

Significance: 0.0532775

CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;CAbsent

Pattern: motif2.motif

Significance: 0.05218430000000001

NPC;Ch13;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.0245104

Muscle;A;CLAbsent

Pattern: motif19.motif

Significance: 0.05663680000000001