# Parameters
data_name = "Max"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Max: #23
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.0191312 |
Significance: 0.027514799999999996 |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.020566400000000002 |
Significance: 0.0380274 |
| B_SPLND;A;GEO |
Significance: 0.044672500000000004 |
Significance: 0.00906665 |
| aNonTfh;A;CL |
Significance: 0.017221200000000002 |
Significance: 0.0433901 |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.034992199999999994 |
Significance: 0.0404308 |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.058594299999999995 |
Significance: 0.024816400000000002 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.0441717 |
Significance: 0.05861040000000001 |
| ISP;A;CL |
Significance: 0.0160605 |
Significance: 0.0130803 |
| LNG;A;CL |
Significance: 0.026352299999999995 |
Significance: 0.0565882 |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.0479098 |
Significance: 0.05121619999999999 |
| LNG;8wks;D;GEO |
Significance: 0.0404489 |
Significance: 0.0204754 |
| gamma_delta_TCR;A;CL |
Significance: 0.022241999999999998 |
Significance: 0.042169099999999994 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.0159404 |
Significance: 0.0426032 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0524731 |
Significance: 0.0150305 |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.054130700000000004 |
Significance: 0.0535759 |
| wES;LVR;E11.5;D.;En |
Significance: 0.0202933 |
Significance: 0.0329657 |
| ES;F1216;A;GEO |
Significance: 0.044632599999999995 |
Significance: 0.052728199999999996 |
| Heart;8wks;D;En |
Significance: 0.056303399999999997 |
Significance: 0.049873 |
| wES;RTN;E11.5;D;En |
Significance: 0.01524 |
Significance: 0.033904199999999995 |
| ILC3;A;GEO |
Significance: 0.050475099999999995 |
Significance: 0.045360199999999996 |
| naiveT;CD8+;A;GEO |
Significance: 0.0329513 |
Significance: 0.0469919 |
| Muller;P12;D;En |
Significance: 0.053484000000000004 |
Significance: 0.059613099999999995 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.027113599999999998 |
Significance: 0.059244200000000004 |
Unique Cell types only TF-MoDISco finds Max: #167
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 0.05418340000000001 | Absent |
| memT;CD4+;A;CL |
Significance: 0.0258246 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.010786 | Absent |
| proB;A;CL |
Significance: 0.0129089 | Absent |
| B1_B;A;CL |
Significance: 0.058010400000000004 | Absent |
| GC_B;A;CL |
Significance: 0.0461875 | Absent |
| plasmaB;A;CL |
Significance: 0.015228100000000001 | Absent |
| aB_LPS;A;CL |
Significance: 0.0402931 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.0571957 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.0128236 | Absent |
| Mast;A;CL |
Significance: 0.058019900000000006 | Absent |
| BSPHL;A;CL |
Significance: 0.028718900000000002 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0155566 | Absent |
| Tfh;A;CL |
Significance: 0.021475599999999997 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.014719999999999999 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0151714 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0262325 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0212178 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.022162400000000002 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0231817 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.055998900000000004 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0135347 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.0182313 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.0569278 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0479686 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.017909400000000002 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0202435 | Absent |
| Erythroblast;A;CL |
Significance: 0.0457837 | Absent |
| DP;A;CL |
Significance: 0.0405011 | Absent |
| DP3a;A;CL |
Significance: 0.0141793 | Absent |
| DP3b;A;CL |
Significance: 0.0138773 | Absent |
| ES;E14;A;CL |
Significance: 0.0369958 | Absent |
| ES;MEF;A;CL |
Significance: 0.044998500000000004 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.05290689999999999 | Absent |
| Adipose;A;CL |
Significance: 0.057085500000000004 | Absent |
| testis;A;CL |
Significance: 0.0270385 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.00661815 | Absent |
| STMCH;A;CL |
Significance: 0.0514225 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.0524264 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.024931000000000002 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.01063 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00844319 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.026109800000000002 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.016846400000000004 | Absent |
| restingB;A;CL |
Significance: 0.049834300000000005 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.012787200000000002 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.055923900000000006 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.05964149999999999 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0357569 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.055197500000000004 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.022496000000000002 | Absent |
| ILC2;A;CL |
Significance: 0.0523586 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.0541187 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.0547309 | Absent |
| CLP;A;CL |
Significance: 0.0475869 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.021894999999999998 | Absent |
| NTRPHL;A;GEO |
Significance: 0.0397876 | Absent |
| ES;J1;A;CL |
Significance: 0.0519649 | Absent |
| ES;E14;A;GEO |
Significance: 0.026432499999999998 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.014254499999999998 | Absent |
| RTN;A;GEO |
Significance: 0.0140141 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0580452 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.0473788 | Absent |
| ILC1;A;GEO |
Significance: 0.0438833 | Absent |
| ILC2;A;GEO |
Significance: 0.0148781 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0142042 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0546975 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.025409 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0237364 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.05762080000000001 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.0200681 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.024422700000000002 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.0253809 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0334474 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0172418 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.020322299999999998 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0173202 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0178384 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0253582 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.03659280000000001 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0240533 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0226773 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.027729300000000002 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0370056 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0217683 | Absent |
| aB;A;GEO |
Significance: 0.058163 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0180867 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.0134719 | Absent |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.0556923 | Absent |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.05624880000000001 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.0379025 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.013724600000000002 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 0.057871900000000004 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0371654 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.025208500000000002 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.033551199999999996 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.013726200000000001 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.054673400000000004 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.056494600000000006 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.019950299999999997 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.033518900000000004 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.05912919999999999 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.049069699999999994 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.059312199999999995 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0207859 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0342604 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.031153399999999998 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0150215 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.0214319 | Absent |
| NPC;F129;A;GEO |
Significance: 0.029395499999999998 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.030292200000000002 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0574245 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.036094 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.0241766 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.0329581 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.055499400000000004 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.057970900000000006 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.00959744 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0431065 | Absent |
| pMeg;A;En |
Significance: 0.0202092 | Absent |
| EPP;A;En |
Significance: 0.058838699999999994 | Absent |
| MegEP;A;CL |
Significance: 0.039372000000000004 | Absent |
| pErythroblast;A;En |
Significance: 0.0481398 | Absent |
| MegP;A;En |
Significance: 0.053158800000000006 | Absent |
| pCMP;A;CL |
Significance: 0.0304408 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.0481093 | Absent |
| ES;D0;D;GEO |
Significance: 0.0462879 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.044927499999999995 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.057748400000000005 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0505583 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0222577 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.0139726 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.055238199999999994 | Absent |
| ES;E14;D;En |
Significance: 0.025277599999999997 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.024819400000000002 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.056906899999999996 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0545842 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.0572413 | Absent |
| KDNY;P0;D;En |
Significance: 0.0481325 | Absent |
| KDNY;8wks;D;En |
Significance: 0.0562264 | Absent |
| LNG;8wks;D;En |
Significance: 0.0532862 | Absent |
| LNG;P0;D;En |
Significance: 0.055343399999999994 | Absent |
| Adipose;D;En |
Significance: 0.0336466 | Absent |
| RTN;D1;D;En |
Significance: 0.0500331 | Absent |
| CRBLM;D;En |
Significance: 0.0282057 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0184169 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0400003 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.0413899 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0392524 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.021672900000000002 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.058551900000000004 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.0507349 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.0188563 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.0195722 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.016172299999999997 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0138077 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.053028399999999996 | Absent |
| STMCH;P0;D;En |
Significance: 0.029964799999999996 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.055799699999999994 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.00991561 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.0540696 | Absent |
| AML;D;En |
Significance: 0.0285325 | Absent |
| CH12.LX;D;En |
Significance: 0.034489 | Absent |
| MEL;D;En |
Significance: 0.031752499999999996 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.059555 | Absent |
| NIH3T3;D;En |
Significance: 0.044643199999999994 | Absent |
| 3T3-L1;D;En |
Significance: 0.0583871 | Absent |
Unique Cell types only Homer finds Max: #15
| Cell type | Modisco | Homer |
|---|---|---|
| LVR;8wks;D;En | Absent |
Significance: 0.037262300000000005 |
| wES;Fr_lmb;E11.5;D;En | Absent |
Significance: 0.0333996 |
| wES;FaceP;E14.5;D;En | Absent |
Significance: 0.0237132 |
| DC;A;En | Absent |
Significance: 0.0551692 |
| ES;ZhBTc4;1;D;GEO | Absent |
Significance: 0.028469099999999997 |
| MCRPHG;A;CL | Absent |
Significance: 0.0578857 |
| NPC;Ch13;A;GEO | Absent |
Significance: 0.0209463 |
| ILC2precrsr;A;CL | Absent |
Significance: 0.049177 |
| DC_LPS;6h;A;GEO | Absent |
Significance: 0.0578095 |
| MTR_NRN_MN1;methyl3;D;En | Absent |
Significance: 0.0302872 |
| ENDRM_ESD;A;GEO | Absent |
Significance: 0.025197999999999998 |
| Hnd_BRN;P0;D;En | Absent |
Significance: 0.054757799999999995 |
| Heart;D;En | Absent |
Significance: 0.0575118 |
| placenta;A;CL | Absent |
Significance: 0.0202337 |
| npES;ZHBTC4;doxyc;treat;A;GEO | Absent |
Significance: 0.0581251 |
