# Parameters
data_name = "Nr5a2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:26:13,862 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0283994 |
Significance: 0.0537982 |
npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0414579 |
Significance: 0.0520577 |
LVR;8wks;D;En |
Significance: 0.033660300000000004 |
Significance: 0.0587388 |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.00200655 |
Significance: 0.00221071 |
ES;ZhBTc4;1;D;GEO |
Significance: 0.00016041799999999998 |
Significance: 0.05855369999999999 |
ES;ZhBTc4;2;D;GEO |
Significance: 0.0008257830000000001 |
Significance: 0.00874741 |
ES;D0;D;GEO |
Significance: 0.000135945 |
Significance: 0.00196337 |
Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.055358500000000005 |
Significance: 0.03994330000000001 |
LVR;8wks;D;GEO |
Significance: 0.0407739 |
Significance: 0.0520078 |
LRG_INTSTN;8wks;D;En |
Significance: 0.0432236 |
Significance: 0.0232902 |
Adrenal;A;CL |
Significance: 0.000180489 |
Significance: 0.0009040119999999999 |
wES;MSDRM;E11.5;D;En |
Significance: 0.036392400000000005 |
Significance: 0.05950219999999999 |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.011352600000000001 |
Significance: 0.00188247 |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.000566501 |
Significance: 0.00917006 |
ES;E14;D;En |
Significance: 0.00119229 |
Significance: 0.0585054 |
ES;C57BL_6J;R1;D;En |
Significance: 0.00157595 |
Significance: 0.031004000000000004 |
npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0366153 |
Significance: 0.0582139 |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.0007413010000000001 |
Significance: 0.00369652 |
placenta;A;CL |
Significance: 0.055096400000000004 |
Significance: 0.05183340000000001 |
KDNY;8wks;D;En |
Significance: 0.0594962 |
Significance: 0.0514163 |
Cell type | Modisco | Homer |
---|---|---|
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0548582 | Absent |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.0494844 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.017946200000000002 | Absent |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.046637 | Absent |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.000184832 | Absent |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.038312900000000004 | Absent |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.038095300000000006 | Absent |
npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.043111500000000004 | Absent |
wES;posterior;1;E9.5;A;GEO |
Significance: 0.0176727 | Absent |
wES;posterior;2;E9.5;A;GEO |
Significance: 0.0572819 | Absent |
wES;posterior;1;E8.5;A;GEO |
Significance: 0.049201800000000004 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0328065 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0268551 | Absent |
CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.04833540000000001 | Absent |
iPV_NRN;A;GEO |
Significance: 0.03764869999999999 | Absent |
ES;E14;A;CL |
Significance: 0.037056 | Absent |
SML_INTSTN;A;CL |
Significance: 0.0477116 | Absent |
LRG_INTSTN;A;CL |
Significance: 0.0298936 | Absent |
Melanotrope;A;GEO |
Significance: 0.0493394 | Absent |
Muscle;A;CL |
Significance: 0.0498601 | Absent |
416B_MP;CD34+;D;GEO |
Significance: 0.000206446 | Absent |
KDNY;P0;D;En |
Significance: 0.0446582 | Absent |
wES;LVR;E11.5;D.;En |
Significance: 0.0320219 | Absent |
ES;J1;A;CL |
Significance: 0.00193194 | Absent |
LVR;P0;D;En |
Significance: 0.0503598 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.0111925 | Absent |
Heart;8wks;D;En |
Significance: 0.015126599999999999 | Absent |
Heart;P0;D;En |
Significance: 0.00513681 | Absent |
ILC2+IL33+IL25;A;GEO |
Significance: 0.051454 | Absent |
416B_MP;CD34+;D;En |
Significance: 0.000253812 | Absent |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0553677 | Absent |