# Parameters
data_name = "Hoxc4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:14,516 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxc4: Motif: M00530_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxc4: #2

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00854409	Pattern: motif8.motif Significance: 0.04353030000000001
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.05542869999999999	Pattern: motif4.motif Significance: 0.0465911

Unique Cell types only TF-MoDISco finds Hoxc4: #19

Cell type	Modisco	Homer
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0122051	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00891119	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.0307356	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.031845599999999995	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0357167	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00207665	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0422793	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0170698	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0303441	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.026838099999999997	Absent
iPV_NRN;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.0373008	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0359829	Absent
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.011448200000000002	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.000115037	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.025271000000000002	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.025462000000000002	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0451961	Absent
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.011317200000000001	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0241353	Absent

Unique Cell types only Homer finds Hoxc4: #2

Cell type	Modisco	Homer
wES;Hnd_BRN;E14.5;D;En	Absent	Pattern: motif3.motif Significance: 0.0303488
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.0206842