In [1]:
# Parameters
data_name = "Sox9"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:36:26,606 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Sox9: Motif: M09399_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox9: #24

Cell typeModiscoHomer
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 4.6107e-06

Pattern: motif10.motif

Significance: 0.0226489

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0218307

Pattern: motif9.motif

Significance: 0.047568

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_2

Significance: 1.57284e-05

Pattern: motif3.motif

Significance: 8.637960000000001e-08

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 9.45835e-06

Pattern: motif2.motif

Significance: 6.63026e-05

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 5.26067e-06

Pattern: motif3.motif

Significance: 4.2167200000000005e-05

npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 3.24686e-05

Pattern: motif8.motif

Significance: 9.35004e-06

wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 3.02885e-05

Pattern: motif3.motif

Significance: 0.000183542

wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 1.30628e-05

Pattern: motif3.motif

Significance: 0.00569194

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 8.8025e-06

Pattern: motif4.motif

Significance: 3.1062199999999995e-05

wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 5.341169999999999e-06

Pattern: motif6.motif

Significance: 7.36603e-05

wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 3.42096e-05

Pattern: motif3.motif

Significance: 1.60181e-05

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 6.57409e-05

Pattern: motif8.motif

Significance: 6.24288e-07

npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 3.90066e-05

Pattern: motif4.motif

Significance: 1.42129e-06

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 6.64914e-11

Pattern: motif14.motif

Significance: 0.000161443

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 5.11761e-05

Pattern: motif4.motif

Significance: 7.18117e-05

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 1.94952e-05

Pattern: motif7.motif

Significance: 0.010248100000000001

ES;E14;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0381123

Pattern: motif7.motif

Significance: 0.0393177

ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00420709

Pattern: motif20.motif

Significance: 0.013485200000000001

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_6

Significance: 4.49233e-05

Pattern: motif9.motif

Significance: 0.0477088

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 6.0986099999999995e-05

Pattern: motif13.motif

Significance: 0.017250099999999997

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 2.27815e-07

Pattern: motif10.motif

Significance: 0.036925599999999996

Muller;P12;D;En

Pattern: metacluster_1/pattern_7

Significance: 7.11809e-09

Pattern: motif8.motif

Significance: 0.00566009

wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_2

Significance: 6.9103699999999995e-06

Pattern: motif7.motif

Significance: 0.000352231

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 2.69427e-05

Pattern: motif6.motif

Significance: 0.0005819590000000001

Unique Cell types only TF-MoDISco finds Sox9: #41

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_18

Significance: 6.84717e-10

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 1.9979e-08

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_15

Significance: 3.63119e-09

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 1.10993e-05

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_18

Significance: 1.98759e-11

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00200044

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.000105158

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 1.22647e-05

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 3.3976e-05

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 1.89066e-07

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.00731463

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00671443

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.022488900000000003

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0210199

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_10

Significance: 1.89104e-12

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 2.43152e-09

Absent
SPNL_CHRD;A;CL

Pattern: metacluster_1/pattern_6

Significance: 3.77461e-13

Absent
NRV;Eye-OPTC;A;CL

Pattern: metacluster_0/pattern_2

Significance: 6.3939199999999996e-15

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.00120457

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_16

Significance: 9.69368e-17

Absent
BRN;MDL_OBLNGT;A;CL

Pattern: metacluster_1/pattern_4

Significance: 1.58089e-11

Absent
BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_17

Significance: 1.7764e-10

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_18

Significance: 6.469119999999999e-10

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 1.60929e-14

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0137596

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.031854099999999996

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00821045

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.027057799999999996

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 9.06459e-10

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.00127663

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_19

Significance: 4.12658e-06

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_5

Significance: 3.48899e-05

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00017503400000000002

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 3.15008e-05

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.000157991

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 4.65648e-05

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.000133218

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_7

Significance: 3.90755e-05

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.000297573

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_15

Significance: 1.54279e-14

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_17

Significance: 4.4174799999999997e-13

Absent
Unique Cell types only Homer finds Sox9: #1

Cell typeModiscoHomer
ES;ZhBTc4;2;D;GEOAbsent

Pattern: motif7.motif

Significance: 0.0227269