In [1]:
# Parameters
data_name = "Bcl6"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:59:06,215 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Bcl6: Motif: M08024_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Bcl6: #2

Cell typeModiscoHomer
MEL_Znc_di-cl;24h;D;En

Pattern: metacluster_1/pattern_9

Significance: 6.82278e-05

Pattern: motif1.motif

Significance: 0.0418619

pGMP;A;En

Pattern: metacluster_1/pattern_10

Significance: 0.0568543

Pattern: motif1.motif

Significance: 0.0356594

Unique Cell types only TF-MoDISco finds Bcl6: #55

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.0218023

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0218603

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0146238

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0103089

Absent
proB;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0046073

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.016650599999999998

Absent
MZ_B;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.0594563

Absent
B_SPLND;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.026307999999999998

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.047210300000000004

Absent
aB_LPS+IL21;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.0307262

Absent
CH12.LX;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.059965

Absent
Mast;A;CL

Pattern: metacluster_0/pattern_20

Significance: 0.03527380000000001

Absent
Tfh_LCMV;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.013929599999999999

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.00819619

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.036225400000000005

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.0385423

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0501871

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0183628

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.0412617

Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00857652

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.016215

Absent
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.014542700000000002

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0304756

Absent
CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0291175

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.0129179

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.040729699999999994

/

Pattern: metacluster_0/pattern_17

Significance: 0.0426404

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.023469

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0454796

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0163551

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0141227

Absent
wES;GRM;E16.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.0386126

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.0121958

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.013708000000000001

Absent
immatureB_SPLND;CD43-_CD11b-;D;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.0508199

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0016074000000000001

Absent
ILC2;A;CL

Pattern: metacluster_1/pattern_0

Significance: 0.00773185

Absent
aB_LPS+IL4+Oligomycin_24h;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.0430481

Absent
wCH12;A;CL

Pattern: metacluster_1/pattern_13

Significance: 0.04564

Absent
CH12;med14;A;CL

Pattern: metacluster_1/pattern_13

Significance: 0.0320335

Absent
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.040519

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.057730399999999994

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.041782599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.043776999999999996

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_4

Significance: 0.0539814

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0571031

Absent
naiveT;CD8+;A;GEO

Pattern: metacluster_1/pattern_22

Significance: 0.00452568

Absent
immatureB_SPLND;CD43-_CD11b-;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0516013

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.0406129

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00072927

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.054325599999999995

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.011339799999999999

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0122229

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.0481797

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.0049283

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.009952200000000001

Absent
Unique Cell types only Homer finds Bcl6: #12

Cell typeModiscoHomer
MPP;A;CLAbsent

Pattern: motif2.motif

Significance: 0.039874099999999996

DC_LPS;4h;A;EnAbsent

Pattern: motif1.motif

Significance: 0.023022

LNG;8wks;D;EnAbsent

Pattern: motif15.motif

Significance: 0.0169745

RTN;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0547518

DC_BMD;A;CLAbsent

Pattern: motif1.motif

Significance: 0.020946799999999998

MCRPHG;A;CLAbsent

Pattern: motif1.motif

Significance: 0.028714

MCRPHG_BMD.UnStmltd;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.0568721

MCRPHG_BMD.LPD_Stmltd;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.0368656

AML;D;EnAbsent

Pattern: motif1.motif

Significance: 0.0503054

DC_LPS;6h;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.03229

DC_LPS;2h;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.0219456

DC_pBMD;A;GEOAbsent

Pattern: motif1.motif

Significance: 0.0528514