# Parameters
data_name = "Dbx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:01:05,273 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Cell type	Modisco	Homer
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00873168	Pattern: motif3.motif Significance: 0.0501196
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0081976	Pattern: motif9.motif Significance: 0.0425691
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.00500946	Pattern: motif13.motif Significance: 0.0489155
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.0274869	Pattern: motif4.motif Significance: 0.0206958
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0112999 / Pattern: metacluster_0/pattern_8 Significance: 0.0210063	Pattern: motif3.motif Significance: 0.0105771
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.00829087	Pattern: motif14.motif Significance: 0.00551246
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.00896283	Pattern: motif24.motif Significance: 0.023775599999999997

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.00834712	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0103644	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_7 Significance: 0.029881	Absent
wES;FaceP;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0350533	Absent
MN1;D;En	Pattern: metacluster_1/pattern_9 Significance: 0.0559129	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.017941299999999997	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0112031	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.021965400000000003	Absent
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.00927558	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.0127158	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.00632247	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_18 Significance: 0.0244058	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.00854734	Absent
iVIP_NRN;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0399116	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.011464	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.012408200000000001	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0262108	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0192522	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.015100299999999999	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.00976703	Absent
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.0506334	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.011034899999999999	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.008165100000000002	Absent