In [1]:
# Parameters
data_name = "Emx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:04:30,095 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Emx2: Motif: M00495_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Emx2: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000602832

Pattern: motif4.motif

Significance: 0.040699599999999996

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 2.2063000000000002e-05

Pattern: motif3.motif

Significance: 0.0246217

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.047305

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00174051

Pattern: motif3.motif

Significance: 0.0216013

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00325433

Pattern: motif9.motif

Significance: 0.00585749

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00437049

Pattern: motif6.motif

Significance: 0.00669593

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0482801

Pattern: motif7.motif

Significance: 0.0394772

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00024089

Pattern: motif2.motif

Significance: 0.00237484

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00031837799999999997

Pattern: motif3.motif

Significance: 0.00186492

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0406069

Pattern: motif3.motif

Significance: 0.0127618

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00339584

Pattern: motif13.motif

Significance: 0.00847391

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00190837

Pattern: motif4.motif

Significance: 0.00398118

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00149784

Pattern: motif2.motif

Significance: 0.00190072

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00262334

Pattern: motif2.motif

Significance: 0.00143467

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.023234900000000003

Pattern: motif10.motif

Significance: 0.00870718

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011554799999999999

Pattern: motif14.motif

Significance: 0.0053328

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0165122

Pattern: motif13.motif

Significance: 0.008159399999999999

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00159784

Pattern: motif6.motif

Significance: 0.0112762

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.016412799999999998

Pattern: motif16.motif

Significance: 0.00938426

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00148445

Pattern: motif2.motif

Significance: 0.00218371

Unique Cell types only TF-MoDISco finds Emx2: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0435096

/

Pattern: metacluster_0/pattern_25

Significance: 0.00285935

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0105044

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 8.08942e-05

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.022278400000000004

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00108531

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 1.12075e-05

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.057272699999999996

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.022274799999999997

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0303168

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0168565

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00623152

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0040675

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0444967

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.048668699999999995

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00244616

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00278134

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.056026599999999996

Absent
Unique Cell types only Homer finds Emx2: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0537414

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.00790793

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0435168

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.011949