# Parameters
data_name = "Otx2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:26:49,451 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Otx2: Motif: M09183_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Otx2: #10

Cell type	Modisco	Homer
RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.00104397	Pattern: motif2.motif Significance: 0.0403943
Adipose;D;En	Pattern: metacluster_0/pattern_15 Significance: 0.05791810000000001	Pattern: motif12.motif Significance: 0.044692800000000005
RTN;D1;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.042561699999999994	Pattern: motif5.motif Significance: 0.00948107
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.00338918	Pattern: motif3.motif Significance: 0.053120900000000006 / Pattern: motif14.motif Significance: 0.0231168
ROD_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.000802852	Pattern: motif2.motif Significance: 0.0007402260000000001
ROD_PHT_RCPTR_RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.021191400000000003	Pattern: motif3.motif Significance: 0.00610392
GCN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0514302	Pattern: motif2.motif Significance: 0.0337904
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.00210839	Pattern: motif2.motif Significance: 0.00566644
CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.013476400000000001	Pattern: motif2.motif Significance: 0.00375981
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.00445073	Pattern: motif13.motif Significance: 0.0206923

Unique Cell types only TF-MoDISco finds Otx2: #6

Cell type	Modisco	Homer
eye-NRL_RTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.0136653	Absent
Corticotrope;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.026392400000000003	Absent
wES;Hnd_BRN;E11.5;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.00297283	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.00723793	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00833621	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.0224367	Absent

No Cell types only Homer finds Otx2