# Parameters
data_name = "Xbp1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:48:20,140 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL |
Significance: 0.012605400000000001 |
Significance: 0.042945300000000006 |
naiveCD8;A;CL |
Significance: 0.026551799999999997 |
Significance: 0.05741990000000001 |
wES;Fr_lmb;E11.5;D;En |
Significance: 0.0172477 |
Significance: 0.019759799999999998 |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0474943 |
Significance: 0.024999900000000002 |
NK_SPLND;A;CL |
Significance: 0.0370339 |
Significance: 0.0393774 |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.0538889 |
Significance: 0.02514 |
preB;A;CL |
Significance: 0.051786900000000004 |
Significance: 0.0218088 |
wES;FaceP;E11.5;D;En |
Significance: 0.0543681 |
Significance: 0.0236952 |
LRG_INTSTN;8wks;D;En |
Significance: 0.0381105 |
Significance: 0.0254225 |
STMCH;P0;D;En |
Significance: 0.0167291 |
Significance: 0.047835300000000004 |
SKLTL_Muscle;8wks;D;En |
Significance: 0.03365069999999999 |
Significance: 0.022281400000000003 |
B_SPLND;A;GEO |
Significance: 0.029602800000000002 |
Significance: 0.0213302 |
Spleen;8wks;D;En |
Significance: 0.048556800000000004 |
Significance: 0.0311116 |
aB_LSP+a_d_dextran;A;CL |
Significance: 0.0431709 |
Significance: 0.0577882 |
DC_LPS;2h;A;GEO |
Significance: 0.0444699 |
Significance: 0.057389499999999996 |
NTRPHL;A;CL |
Significance: 0.054163499999999996 |
Significance: 0.050051599999999995 |
CN_PHT_RCPTR;A;GEO |
Significance: 0.037679500000000005 |
Significance: 0.0323372 |
npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.022264199999999998 |
Significance: 0.010573899999999999 |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0223149 |
Significance: 0.0396006 |
npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.046351300000000005 |
Significance: 0.0563117 |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.0266533 |
Significance: 0.029143400000000003 |
wES;posterior;1;E8.5;A;GEO |
Significance: 0.0577565 |
Significance: 0.014758100000000001 |
DC_BMD;A;CL |
Significance: 0.0543885 |
Significance: 0.0200055 |
iVIP_NRN;A;GEO |
Significance: 0.0501218 |
Significance: 0.0345924 |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.0378057 |
Significance: 0.0336803 |
Heart;D;En |
Significance: 0.0269617 |
Significance: 0.013074100000000002 |
Adipose;A;CL |
Significance: 0.0450326 |
Significance: 0.0378514 |
Mammary;A;CL |
Significance: 0.024256599999999996 |
Significance: 0.0460897 |
npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.0559648 |
Significance: 0.054261000000000004 |
testis;A;CL |
Significance: 0.0325144 |
Significance: 0.033003199999999996 |
pMeg;A;En |
Significance: 0.040144900000000004 |
Significance: 0.058777699999999995 |
SPNL_CHRD;A;CL |
Significance: 0.0382048 |
Significance: 0.0501344 |
MegP;A;En |
Significance: 0.0415542 |
Significance: 0.029643 |
DC_LPS;4h;A;En |
Significance: 0.025739099999999997 |
Significance: 0.0302596 |
DC;A;En |
Significance: 0.053978399999999996 |
Significance: 0.017039500000000003 |
ES;ZhBTc4;1;D;GEO |
Significance: 0.0439882 |
Significance: 0.0457951 |
ES;ZhBTc4;2;D;GEO |
Significance: 0.0552231 |
Significance: 0.0274554 |
BRN;CRBLM;A;CL |
Significance: 0.0509581 |
Significance: 0.026119299999999998 |
ES;D0;D;GEO |
Significance: 0.017288099999999997 |
Significance: 0.0269653 |
LVR;8wks;D;GEO |
Significance: 0.0383289 |
Significance: 0.0230707 |
LNG;8wks;D;GEO |
Significance: 0.0320594 |
Significance: 0.00701601 |
3134_mammaryADNCRCNM;D;GE |
Significance: 0.0312607 |
Significance: 0.03829369999999999 |
gamma_delta_TCR_MCR;A;CL |
Significance: 0.043600599999999996 |
Significance: 0.0352301 |
NK;IL2+IL12+;A;CL |
Significance: 0.0229297 |
Significance: 0.013446799999999998 |
NCR+ILC3+IL23;A;CL |
Significance: 0.0373446 |
Significance: 0.0272219 |
aB_LPS+IL4_24h;A;CL |
Significance: 0.0380787 |
Significance: 0.051325499999999996 |
ES;E14;D;En |
Significance: 0.057446699999999996 |
Significance: 0.0317806 |
NIH3T3_FBROBLST;D;En |
Significance: 0.0346847 |
Significance: 0.026069799999999997 |
CH12;med14;A;CL |
Significance: 0.0399651 |
Significance: 0.0207828 |
wCH12_drug;A;CL |
Significance: 0.0465676 |
Significance: 0.011999600000000001 |
FBRBLST;8wks;D;En |
Significance: 0.0437997 |
Significance: 0.0412284 |
3T3-L1;FBRBLST;D;En |
Significance: 0.034795 |
Significance: 0.057093700000000004 |
KDNY;P0;D;En |
Significance: 0.0172987 |
Significance: 0.024774900000000002 |
KDNY;8wks;D;En |
Significance: 0.0148314 |
Significance: 0.0225036 |
LVR;8wks;D;En |
Significance: 0.0388325 |
Significance: 0.055927599999999994 |
ES;F1216;A;GEO |
Significance: 0.0229575 |
Significance: 0.014121200000000002 |
LNG;P0;D;En |
Significance: 0.0387401 |
Significance: 0.03911919999999999 |
Heart;8wks;D;En |
Significance: 0.043756699999999996 |
Significance: 0.00603152 |
Heart;P0;D;En |
Significance: 0.0529446 |
Significance: 0.01924 |
ILC2+IL33+IL25;A;GEO |
Significance: 0.035704 |
Significance: 0.0207372 |
wES;MSDRM;E11.5;D;En |
Significance: 0.043078899999999996 |
Significance: 0.0534936 |
Muller;P12;D;En |
Significance: 0.0253187 |
Significance: 0.03976969999999999 |
Fr_BRN;P0;D;En |
Significance: 0.0506391 |
Significance: 0.04147580000000001 |
Hnd_BRN;P0;D;En |
Significance: 0.0415496 |
Significance: 0.0144113 |
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.05584580000000001 |
Significance: 0.0448281 |
Cell type | Modisco | Homer |
---|---|---|
memT;CD4+;A;CL |
Significance: 0.057129599999999996 | Absent |
Th17;CD4+;A;CL |
Significance: 0.0405224 | Absent |
proB;A;CL |
Significance: 0.0581296 | Absent |
matureB;A;CL |
Significance: 0.045194099999999994 | Absent |
B1_B;A;CL |
Significance: 0.030501999999999998 | Absent |
plasmaB;A;CL |
Significance: 0.05153869999999999 | Absent |
aB_LPS+IL4;A;CL |
Significance: 0.0346539 | Absent |
aB_CD40+IL4;A;CL |
Significance: 0.048994199999999995 | Absent |
Mast;A;CL |
Significance: 0.0392157 | Absent |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0505398 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.0475693 | Absent |
Tfh;A;CL |
Significance: 0.053748500000000005 | Absent |
aNonTfh;A;CL |
Significance: 0.0590319 | Absent |
aNonTfh_mut;A;CL |
Significance: 0.0359766 | Absent |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0374264 | Absent |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0431931 | Absent |
largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.052635 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0531499 | Absent |
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0361547 | Absent |
CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0483735 | Absent |
CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.053853399999999996 | Absent |
CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.035731599999999995 | Absent |
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0479078 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.03396969999999999 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.055038800000000006 | Absent |
DP3a;A;CL |
Significance: 0.0483608 | Absent |
DP3b;A;CL |
Significance: 0.0439444 | Absent |
ISP;A;CL |
Significance: 0.0483436 | Absent |
ES;E14;A;CL |
Significance: 0.0369958 | Absent |
ES;MEF;A;CL |
Significance: 0.038663199999999995 | Absent |
SML_INTSTN;A;CL |
Significance: 0.0149368 | Absent |
LRG_INTSTN;A;CL |
Significance: 0.0427258 | Absent |
Muscle;A;CL |
Significance: 0.0139304 | Absent |
placenta;A;CL |
Significance: 0.0487275 | Absent |
eye-NRL_RTN;A;CL |
Significance: 0.036243199999999996 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.0203799 | Absent |
BRN;OLFTRY_BLB;A;CL |
Significance: 0.044411599999999996 | Absent |
BRN;FRNTL_CRTX;A;CL |
Significance: 0.020396400000000002 | Absent |
BRN;PTMN;A;CL |
Significance: 0.0581924 | Absent |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.0397962 | Absent |
restingB;A;CL |
Significance: 0.038486400000000004 | Absent |
aB;CD180;A;CL |
Significance: 0.0424205 | Absent |
LNG_TRM_HSC;A;CL |
Significance: 0.043665300000000004 | Absent |
SHRT_TRM_HSC;A;CL |
Significance: 0.00988528 | Absent |
gamma_delta_TCR;A;CL |
Significance: 0.0499916 | Absent |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0308709 | Absent |
ILC2precrsr;A;CL |
Significance: 0.00963197 | Absent |
NCR+ILC3;A;CL |
Significance: 0.021340400000000002 | Absent |
ILC2_Nippo;A;CL |
Significance: 0.0502845 | Absent |
ILC1;A;CL |
Significance: 0.048592199999999995 | Absent |
ILC2;A;CL |
Significance: 0.0307361 | Absent |
Th2_nippo;A;CL |
Significance: 0.013715600000000001 | Absent |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0292207 | Absent |
CH12_QNTPLE;A;CL |
Significance: 0.041030000000000004 | Absent |
wCH12;A;CL |
Significance: 0.043893800000000004 | Absent |
CLP;A;CL |
Significance: 0.0386678 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0569962 | Absent |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0367298 | Absent |
ES;J1;A;CL |
Significance: 0.0331029 | Absent |
ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.0534064 | Absent |
ES;v6.5;A;GEO |
Significance: 0.050673800000000005 | Absent |
Mammary_GLND;A;GEO |
Significance: 0.015327799999999999 | Absent |
RTN;A;GEO |
Significance: 0.0471593 | Absent |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0507117 | Absent |
ILC1;A;GEO |
Significance: 0.026841300000000002 | Absent |
ILC2;A;GEO |
Significance: 0.0474142 | Absent |
ILC3;A;GEO |
Significance: 0.0282163 | Absent |
ILC1_AbxGRMFree;A;GEO |
Significance: 0.046691199999999995 | Absent |
ILC3_AbxGRMFree;A;GEO |
Significance: 0.0575562 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.051768299999999996 | Absent |
T_LCMV;CD8+;D33;A;GEO |
Significance: 0.050999 | Absent |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0395296 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 0.0497457 | Absent |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.041596100000000004 | Absent |
cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0488554 | Absent |
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0446319 | Absent |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.058665300000000004 | Absent |
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0533938 | Absent |
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0596774 | Absent |
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0561131 | Absent |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.056287699999999996 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0562061 | Absent |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0582822 | Absent |
iNKT;A;GEO |
Significance: 0.044030400000000004 | Absent |
aB;A;GEO |
Significance: 0.0425532 | Absent |
prePLSM_B;A;GEO |
Significance: 0.0563621 | Absent |
preB_BMD;A;GEO |
Significance: 0.051531799999999996 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.046661400000000006 | Absent |
MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.0516334 | Absent |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.034957 | Absent |
AML;AE9a;A;GEO |
Significance: 0.0448191 | Absent |
ENDRM_ESD;A;GEO |
Significance: 0.05413250000000001 | Absent |
ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.059602199999999994 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.044888599999999994 | Absent |
wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.029104700000000004 | Absent |
npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.023169 | Absent |
wES;posterior;1;E9.5;A;GEO |
Significance: 0.0353559 | Absent |
wES;posterior;2;E9.5;A;GEO |
Significance: 0.039037199999999994 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0303877 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.041106199999999996 | Absent |
SKN_EPTHL;A;GEO |
Significance: 0.0201017 | Absent |
BCK_SKN;A;GEO |
Significance: 0.052798000000000005 | Absent |
NPC;mE6;A;GEO |
Significance: 0.0525903 | Absent |
ePyramidal_NRN;A;GEO |
Significance: 0.0164081 | Absent |
iPV_NRN;A;GEO |
Significance: 0.028167400000000002 | Absent |
G_NRN_P;A;GEO |
Significance: 0.0401749 | Absent |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.0460134 | Absent |
Melanotrope;A;GEO |
Significance: 0.047314499999999995 | Absent |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.027331 | Absent |
ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0424709 | Absent |
Mammary_BptfKO;A;GEO |
Significance: 0.0283493 | Absent |
NIH3T3_FBROBLST;D;GEO |
Significance: 0.0350354 | Absent |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0349222 | Absent |
naiveT_SPLND;CD4+;D;GEO |
Significance: 0.028132900000000002 | Absent |
apCD4Eff;D;GEO |
Significance: 0.0551668 | Absent |
416B_MP;CD34+;D;GEO |
Significance: 0.0324718 | Absent |
WHL_BRN;8wks;D;GEO |
Significance: 0.0550922 | Absent |
wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.051965599999999994 | Absent |
ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.0431713 | Absent |
ES;C57BL_6J;R1;D;En |
Significance: 0.0234422 | Absent |
LVR;P0;D;En |
Significance: 0.049221100000000004 | Absent |
LNG;8wks;D;En |
Significance: 0.0170016 | Absent |
wES;LNG;E14.5;D;En |
Significance: 0.05366900000000001 | Absent |
RTN;D1;D;En |
Significance: 0.028332099999999995 | Absent |
wES;RTN;E11.5;D;En |
Significance: 0.0405585 | Absent |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0495935 | Absent |
wES.Fr_BRN;E14.4;D;En |
Significance: 0.046496800000000005 | Absent |
wES;Hnd_BRN;E11.5;D;En |
Significance: 0.046378699999999995 | Absent |
wES;Hnd_BRN;E14.5;D;En |
Significance: 0.0542544 | Absent |
wES;Md_BRN;E11.5;D;En |
Significance: 0.0549524 | Absent |
Md_BRN;D;En |
Significance: 0.05649119999999999 | Absent |
wES;WHL_BRN;E14.5;D;En |
Significance: 0.026707400000000003 | Absent |
WHL_BRN;8wks;D;En |
Significance: 0.0150768 | Absent |
wES;limb;E14.5;D;En |
Significance: 0.0508347 | Absent |
wES;limb;E11.5;D;En |
Significance: 0.0462484 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.053969500000000004 | Absent |
wES;NRL_Tube;E11.5;D;En |
Significance: 0.039912800000000005 | Absent |
3134_mammaryADNCRCNM;D;En |
Significance: 0.029870499999999998 | Absent |
416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.0351778 | Absent |
CH12.LX;D;En |
Significance: 0.05675830000000001 | Absent |
NIH3T3;D;En |
Significance: 0.05478430000000001 | Absent |
MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0596114 | Absent |
MN1;D;En |
Significance: 0.0502348 | Absent |
Cell type | Modisco | Homer |
---|---|---|
pErythroblast;A;En | Absent |
Significance: 0.048163 |
NTRPHL;A;GEO | Absent |
Significance: 0.0192395 |
wES;LVR;E11.5;D.;En | Absent |
Significance: 0.00387144 |
MCRPHG;A;CL | Absent |
Significance: 0.0147644 |
ES;JM8.N4;Mitosis;A;GEO | Absent |
Significance: 0.0137204 |
CRBLM;D;En | Absent |
Significance: 0.0186862 |
aB_LPS+IL21;A;CL | Absent |
Significance: 0.050963699999999994 |
Erythroid;Ter119+;A;GEO | Absent |
Significance: 0.051412 |
416B_MP;CD34+;D;En | Absent |
Significance: 0.0494478 |
DC_LPS;6h;A;GEO | Absent |
Significance: 0.0577803 |
3T3-L1;D;En | Absent |
Significance: 0.023549900000000002 |
ROD_PHT_RCPTR;A;GEO | Absent |
Significance: 0.026523400000000003 |
Adrenal;A;CL | Absent |
Significance: 0.059524900000000006 |
MegEP;A;CL | Absent |
Significance: 0.0550284 |