In [1]:
# Parameters
data_name = "Hnf1b"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:41,136 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hnf1b: Motif: M09179_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hnf1b: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 4.5709899999999996e-07

Pattern: motif16.motif

Significance: 0.000333665

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 1.48892e-07

/

Pattern: metacluster_0/pattern_20

Significance: 0.046518699999999996

/

Pattern: metacluster_0/pattern_26

Significance: 0.0232209

Pattern: motif25.motif

Significance: 0.00010258700000000001

LVR;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 6.655760000000001e-08

Pattern: motif14.motif

Significance: 0.000109163

wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_14

Significance: 1.5369399999999999e-06

Pattern: motif24.motif

Significance: 0.00011904899999999999

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 1.59853e-08

Pattern: motif16.motif

Significance: 0.000218861

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_8

Significance: 8.525490000000001e-07

Pattern: motif8.motif

Significance: 0.000138517

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.018944700000000002

Pattern: motif9.motif

Significance: 0.051950800000000005

aB;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 2.28609e-06

Pattern: motif22.motif

Significance: 0.000177288

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 1.10288e-06

Pattern: motif18.motif

Significance: 0.000100791

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_7

Significance: 1.81585e-08

Pattern: motif7.motif

Significance: 0.00013512799999999998

/

Pattern: motif15.motif

Significance: 0.045529400000000005

STMCH;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 4.0959300000000004e-06

Pattern: motif14.motif

Significance: 0.000104329

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_10

Significance: 1.46926e-07

Pattern: motif11.motif

Significance: 6.98346e-05

LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 1.46612e-06

Pattern: motif7.motif

Significance: 8.41952e-05

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0373861

Pattern: motif3.motif

Significance: 0.0350394

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.023939

Pattern: motif14.motif

Significance: 0.03173959999999999

KDNY;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 1.5721300000000002e-09

Pattern: motif19.motif

Significance: 0.00016465799999999998

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_3

Significance: 1.11522e-06

Pattern: motif3.motif

Significance: 0.000187455

Unique Cell types only TF-MoDISco finds Hnf1b: #26

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.024999

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.025545099999999998

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.022442300000000002

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.035564099999999994

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.047448199999999996

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.041919599999999994

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0414987

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 3.99341e-07

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.052224099999999996

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 4.8583100000000006e-05

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.05904349999999999

/

Pattern: metacluster_0/pattern_12

Significance: 1.2880200000000001e-06

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0335206

Absent
STMCH;A;CL

Pattern: metacluster_1/pattern_13

Significance: 6.739e-06

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.020065700000000002

Absent
LVR;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 4.196e-07

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_23

Significance: 7.04364e-09

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_23

Significance: 7.11541e-06

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0541097

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.036174300000000006

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.021777599999999998

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0282459

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0403727

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.017719400000000003

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0288925

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0162828

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0184219

Absent
No Cell types only Homer finds Hnf1b