In [1]:
# Parameters
data_name = "Twist2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:46:31,535 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Twist2: Motif: M01718_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Twist2: #16

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.048494699999999995

Pattern: motif5.motif

Significance: 0.00518429

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0344099

Pattern: motif12.motif

Significance: 0.029273200000000003

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0217041

Pattern: motif6.motif

Significance: 0.0222502

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.016828799999999998

Pattern: motif15.motif

Significance: 0.013127100000000001

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0580966

Pattern: motif7.motif

Significance: 0.016339

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.021364599999999997

Pattern: motif7.motif

Significance: 0.00378886

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.058225599999999995

Pattern: motif2.motif

Significance: 0.0134183

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00198918

Pattern: motif4.motif

Significance: 0.00395709

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00339613

Pattern: motif4.motif

Significance: 0.00351373

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0165947

Pattern: motif4.motif

Significance: 0.056782799999999994

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0294981

Pattern: motif2.motif

Significance: 0.026782999999999998

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00811636

Pattern: motif11.motif

Significance: 0.00225891

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.013101699999999999

Pattern: motif7.motif

Significance: 0.00175947

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0196139

Pattern: motif10.motif

Significance: 0.027601099999999996

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00294127

Pattern: motif2.motif

Significance: 0.0245234

wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00203274

Pattern: motif4.motif

Significance: 0.0173145

Unique Cell types only TF-MoDISco finds Twist2: #15

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0325345

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0437154

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0225017

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0448435

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.036562300000000006

Absent
BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.019722299999999998

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.058249300000000004

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0158387

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.013156399999999999

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.058402300000000004

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0273103

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.025804

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.019288200000000002

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0419371

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.010481

/

Pattern: metacluster_0/pattern_24

Significance: 0.0149825

Absent
Unique Cell types only Homer finds Twist2: #5

Cell typeModiscoHomer
wES;Hnd_lmb;E11.5;D;EnAbsent

Pattern: motif11.motif

Significance: 0.051066

wES;FaceP;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.0161512

G_NRN_P;A;GEOAbsent

Pattern: motif15.motif

Significance: 0.0252491

wES;WHL_BRN;E14.5;D;GEOAbsent

Pattern: motif13.motif

Significance: 0.00757158

3T3-L1;D;EnAbsent

Pattern: motif15.motif

Significance: 0.0345231