In [1]:
# Parameters
data_name = "Tead2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:43:48,605 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tead2: Motif: M09437_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tead2: #14

Cell typeModiscoHomer
ES;E14;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00122319

Pattern: motif15.motif

Significance: 0.0015508

LNG;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 7.327149999999999e-05

Pattern: motif14.motif

Significance: 0.000416985

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_15

Significance: 0.00164669

Pattern: motif15.motif

Significance: 0.059822400000000005

LNG;8wks;D;En

Pattern: metacluster_0/pattern_13

Significance: 0.000114196

Pattern: motif15.motif

Significance: 0.00201333

Heart;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.000103416

Pattern: motif10.motif

Significance: 0.00358698

3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_6

Significance: 0.00114007

Pattern: motif9.motif

Significance: 0.0471909

ES;MEF;A;CL

Pattern: metacluster_1/pattern_3

Significance: 9.23467e-05

Pattern: motif3.motif

Significance: 0.058223699999999996

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.000374906

Pattern: motif7.motif

Significance: 0.0116975

Muller;P12;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00306779

Pattern: motif3.motif

Significance: 0.0440111

placenta;A;CL

Pattern: metacluster_0/pattern_2

Significance: 0.00239089

Pattern: motif3.motif

Significance: 0.0110646

3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0401037

Pattern: motif8.motif

Significance: 0.00035006699999999997

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.000385435

Pattern: motif8.motif

Significance: 0.025787599999999997

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.000356965

Pattern: motif8.motif

Significance: 0.014578

KDNY;P0;D;En

Pattern: metacluster_1/pattern_5

Significance: 1.92421e-05

Pattern: motif9.motif

Significance: 0.0238149

Unique Cell types only TF-MoDISco finds Tead2: #49

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_9

Significance: 7.814600000000001e-05

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_14

Significance: 0.00047831400000000003

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.00120248

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_10

Significance: 9.75048e-06

Absent
wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.000159895

Absent
STMCH;P0;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0113077

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.000977056

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0233983

Absent
ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.011681

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0374943

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.00106119

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0007260010000000001

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0007547789999999999

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.000336585

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 9.3703e-05

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0324816

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00022787

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.000196656

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00305429

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.000235083

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.000123817

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 6.54481e-06

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00867262

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0106266

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.000467258

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00036356199999999995

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_8

Significance: 0.00393342

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_11

Significance: 0.027272300000000003

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.000225356

Absent
npES;ZHBTC4;doxyc;treat;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.000514084

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.000250016

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.00743771

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 2.83517e-05

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.013678000000000001

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00270273

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00044347300000000006

Absent
ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.000357748

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.00407969

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0313702

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0423434

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.028930599999999997

/

Pattern: metacluster_1/pattern_22

Significance: 0.00369386

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00774827

/

Pattern: metacluster_1/pattern_23

Significance: 0.00152921

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00165477

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.032758499999999996

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00130259

Absent
wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_10

Significance: 5.951109999999999e-05

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.00412703

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 2.91466e-05

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_27

Significance: 0.0120001

Absent
Unique Cell types only Homer finds Tead2: #2

Cell typeModiscoHomer
NIH3T3_FBROBLST;D;EnAbsent

Pattern: motif8.motif

Significance: 7.54075e-05

3T3-L1;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0297202