# Parameters
data_name = "Sox17"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Sox17: #22
| Cell type | Modisco | Homer |
|---|---|---|
| ENDRM_ESD;A;GEO |
Significance: 0.00361017 |
Significance: 0.00561556 |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.000167283 |
Significance: 7.37019e-05 |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.000230018 |
Significance: 2.25619e-05 |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.000531269 |
Significance: 9.677299999999999e-05 |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.000351376 |
Significance: 0.0123541 |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 1.73077e-05 |
Significance: 2.8580900000000003e-05 |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.00021344799999999998 |
Significance: 0.00253983 |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.000307795 |
Significance: 0.000123426 |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.00028491 |
Significance: 0.00321068 |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.00021376299999999998 |
Significance: 2.49567e-06 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.0014459000000000002 |
Significance: 0.00733556 |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.000867429 |
Significance: 8.53727e-05 |
| NPC;F129;A;GEO |
Significance: 0.00103739 |
Significance: 0.0130589 |
| NPC;Ch13;A;GEO |
Significance: 9.02452e-05 |
Significance: 0.000351543 |
| ES;E14;A;CL |
Significance: 0.00306969 |
Significance: 0.0225086 |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.0008700810000000001 |
Significance: 0.041261400000000004 |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.000398629 |
Significance: 0.0037567 |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.0113705 |
Significance: 0.00333486 |
| wES;RTN;E11.5;D;En |
Significance: 0.00010049399999999999 |
Significance: 0.0280825 |
| Muller;P12;D;En |
Significance: 0.000433987 |
Significance: 0.0471529 |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.000842318 |
Significance: 0.000451375 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.00123528 |
Significance: 0.00350816 |
Unique Cell types only TF-MoDISco finds Sox17: #49
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.0385773 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.00057318 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.0510168 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00302883 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.00872091 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.00552292 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.00069893 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.00078921 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0282242 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.0500937 | Absent |
| NPC;G4;A;GEO |
Significance: 0.0007031510000000001 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.00022440400000000002 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.00316299 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.00419216 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00271224 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.00696248 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.00516995 | Absent |
| Mammary;A;CL |
Significance: 0.001335 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.0119141 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.00858338 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.00836708 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.0044298 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.032793699999999995 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00973157 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00795982 | Absent |
| ES;D0;D;GEO |
Significance: 0.00799584 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.01757 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.00276927 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0444414 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0166558 | Absent |
| ES;J1;A;CL |
Significance: 0.0009710869999999999 | Absent |
| ES;E14;A;GEO |
Significance: 0.000796484 | Absent |
| ES;F1216;A;GEO |
Significance: 0.000759563 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.00422423 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.008460700000000002 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.00155503 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00181025 | Absent |
| Adipose;D;En |
Significance: 0.0555572 | Absent |
| RTN;D1;D;En |
Significance: 2.89875e-05 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.00219166 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.00186989 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.00126645 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.000594056 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00015593899999999999 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.00108891 | Absent |
| Md_BRN;D;En |
Significance: 0.00106748 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.0165819 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.0129805 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.0428499 | Absent |
