# Parameters
data_name = "Mycn"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Mycn: #25
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.0107616 |
Significance: 0.0215259 |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.0115569 |
Significance: 0.055697300000000005 |
| B_SPLND;A;GEO |
Significance: 0.0580067 |
Significance: 0.00932007 |
| aNonTfh;A;CL |
Significance: 0.0119043 |
Significance: 0.0558342 |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.0578425 |
Significance: 0.044041699999999996 |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0488858 |
Significance: 0.036336 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.0153254 |
Significance: 0.0433135 |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0121296 |
Significance: 0.0482778 |
| DP3a;A;CL |
Significance: 0.0117609 |
Significance: 0.054077 |
| ISP;A;CL |
Significance: 0.014727200000000003 |
Significance: 0.013168200000000001 |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.051481500000000006 |
Significance: 0.0241948 |
| Heart;D;En |
Significance: 0.054676 |
Significance: 0.0425264 |
| ES;D0;D;GEO |
Significance: 0.0572265 |
Significance: 0.038901099999999994 |
| gamma_delta_TCR;A;CL |
Significance: 0.012083100000000001 |
Significance: 0.0597009 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0453575 |
Significance: 0.018155599999999997 |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0234422 |
Significance: 0.043205099999999996 |
| KDNY;8wks;D;En |
Significance: 0.0562264 |
Significance: 0.0439926 |
| LVR;8wks;D;En |
Significance: 0.057149 |
Significance: 0.035263499999999996 |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.0107687 |
Significance: 0.045039499999999996 |
| RTN;A;GEO |
Significance: 0.010687899999999998 |
Significance: 0.0437766 |
| wES;RTN;E11.5;D;En |
Significance: 0.0194795 |
Significance: 0.041153699999999994 |
| naiveT;CD8+;A;GEO |
Significance: 0.0235702 |
Significance: 0.057346900000000006 |
| Muller;P12;D;En |
Significance: 0.049821 |
Significance: 0.026067200000000002 |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.058551900000000004 |
Significance: 0.0449714 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.0326036 |
Significance: 0.0520802 |
Unique Cell types only TF-MoDISco finds Mycn: #164
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 0.0578624 | Absent |
| memT;CD4+;A;CL |
Significance: 0.0156661 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0096179 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0595383 | Absent |
| proB;A;CL |
Significance: 0.011502799999999999 | Absent |
| B1_B;A;CL |
Significance: 0.0496236 | Absent |
| GC_B;A;CL |
Significance: 0.042495 | Absent |
| plasmaB;A;CL |
Significance: 0.0577803 | Absent |
| aB_LPS;A;CL |
Significance: 0.033969 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.050760900000000005 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.0163887 | Absent |
| Mast;A;CL |
Significance: 0.053057799999999995 | Absent |
| BSPHL;A;CL |
Significance: 0.028718900000000002 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0118957 | Absent |
| Tfh;A;CL |
Significance: 0.0180655 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.0571226 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.011881000000000001 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0163076 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.015351400000000001 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.0148947 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0199964 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.055998900000000004 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.011581399999999999 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.014216299999999998 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.057425 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.038285599999999996 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0202435 | Absent |
| Erythroblast;A;CL |
Significance: 0.0327833 | Absent |
| DP;A;CL |
Significance: 0.0263902 | Absent |
| DP3b;A;CL |
Significance: 0.0110242 | Absent |
| ES;E14;A;CL |
Significance: 0.0535073 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.0516757 | Absent |
| LNG;A;CL |
Significance: 0.0288132 | Absent |
| testis;A;CL |
Significance: 0.0178365 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.05737040000000001 | Absent |
| STMCH;A;CL |
Significance: 0.0514225 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.0449176 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0246685 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.0113375 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00880281 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0197358 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.0140502 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.0104535 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.057380099999999996 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0545135 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.033870599999999994 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.0395075 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.0140118 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.010030500000000001 | Absent |
| ILC2;A;CL |
Significance: 0.05569580000000001 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.0554049 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.0547309 | Absent |
| CLP;A;CL |
Significance: 0.057956799999999996 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0166356 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.054130700000000004 | Absent |
| NTRPHL;A;GEO |
Significance: 0.027780400000000004 | Absent |
| ES;J1;A;CL |
Significance: 0.046911400000000006 | Absent |
| ES;E14;A;GEO |
Significance: 0.0199274 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0580452 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.030729700000000002 | Absent |
| ILC1;A;GEO |
Significance: 0.0429708 | Absent |
| ILC2;A;GEO |
Significance: 0.0119716 | Absent |
| ILC3;A;GEO |
Significance: 0.0422304 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.010379600000000001 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0383249 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.017499200000000003 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0136369 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.00723412 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.013093200000000001 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0223109 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.011895399999999999 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0261728 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.012498899999999999 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.016604 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.012949299999999999 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.014378299999999998 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0213729 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0238483 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.019783000000000002 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.014284200000000002 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.012095 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.020974299999999998 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0314614 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0152141 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0181968 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.013299100000000001 | Absent |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.045490499999999996 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.047276 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.0108794 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 0.055555099999999996 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0283111 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.0185683 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.026044400000000002 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.0096746 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.0442035 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0320313 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.048942900000000004 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.019957 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0366159 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0312308 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.050687199999999995 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0208001 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0419164 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0581178 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.00966086 | Absent |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.0214319 | Absent |
| NPC;F129;A;GEO |
Significance: 0.0237163 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.028167400000000002 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0173836 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.0130189 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.0536212 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.030466200000000002 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.058202699999999996 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0469819 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.0489152 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0259853 | Absent |
| pMeg;A;En |
Significance: 0.00921163 | Absent |
| EPP;A;En |
Significance: 0.046132599999999996 | Absent |
| MegEP;A;CL |
Significance: 0.033768900000000004 | Absent |
| pErythroblast;A;En |
Significance: 0.050899900000000005 | Absent |
| MegP;A;En |
Significance: 0.053158800000000006 | Absent |
| pCMP;A;CL |
Significance: 0.0304408 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.03795490000000001 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.0514217 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.0404489 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.059740999999999995 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0429262 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.023796 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.05860419999999999 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.0463812 | Absent |
| ES;E14;D;En |
Significance: 0.014921799999999999 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.0561868 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0585345 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.0554645 | Absent |
| KDNY;P0;D;En |
Significance: 0.0421705 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.0177686 | Absent |
| LNG;8wks;D;En |
Significance: 0.057625300000000004 | Absent |
| LNG;P0;D;En |
Significance: 0.0586622 | Absent |
| Heart;8wks;D;En |
Significance: 0.056303399999999997 | Absent |
| Adipose;D;En |
Significance: 0.0213489 | Absent |
| RTN;D1;D;En |
Significance: 0.031160200000000002 | Absent |
| CRBLM;D;En |
Significance: 0.0269464 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0132029 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.033329000000000004 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.028909800000000003 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.040276 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.049063199999999994 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0138423 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.0505515 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.013800899999999998 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.05684209999999999 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.05779600000000001 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0169516 | Absent |
| STMCH;P0;D;En |
Significance: 0.022558099999999998 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.048583499999999995 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.00810826 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.0472851 | Absent |
| AML;D;En |
Significance: 0.0188123 | Absent |
| CH12.LX;D;En |
Significance: 0.023328799999999997 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.0481149 | Absent |
| MEL;D;En |
Significance: 0.0264547 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0453209 | Absent |
| NIH3T3;D;En |
Significance: 0.051943600000000006 | Absent |
| 3T3-L1;D;En |
Significance: 0.0453983 | Absent |
Unique Cell types only Homer finds Mycn: #19
| Cell type | Modisco | Homer |
|---|---|---|
| wES;Fr_lmb;E11.5;D;En | Absent |
Significance: 0.0167827 |
| wES;FaceP;E14.5;D;En | Absent |
Significance: 0.027121499999999996 |
| DC;A;En | Absent |
Significance: 0.0551692 |
| ES;ZhBTc4;1;D;GEO | Absent |
Significance: 0.0308563 |
| LRG_INTSTN;8wks;D;En | Absent |
Significance: 0.0341151 |
| ES;ZhBTc4;2;D;GEO | Absent |
Significance: 0.011398 |
| ES;F1216;A;GEO | Absent |
Significance: 0.0423537 |
| LVR;8wks;D;GEO | Absent |
Significance: 0.024041 |
| MCRPHG;A;CL | Absent |
Significance: 0.0417656 |
| A20;B-lymphoma;D;En | Absent |
Significance: 0.046169699999999994 |
| NPC;Ch13;A;GEO | Absent |
Significance: 0.0247104 |
| Treg;CD4+_CD25+;D;GEO | Absent |
Significance: 0.046405699999999994 |
| DC_LPS;6h;A;GEO | Absent |
Significance: 0.0487449 |
| MTR_NRN_MN1;methyl3;D;En | Absent |
Significance: 0.0275052 |
| ENDRM_ESD;A;GEO | Absent |
Significance: 0.0370259 |
| Fr_BRN;P0;D;En | Absent |
Significance: 0.044339699999999996 |
| Hnd_BRN;P0;D;En | Absent |
Significance: 0.042670599999999996 |
| placenta;A;CL | Absent |
Significance: 0.023253799999999998 |
| wES;5th_Rhmbmr;E9.5;A;GEO | Absent |
Significance: 0.0476453 |
