# Parameters
data_name = "Vsx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:47:34,636 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
wES;limb;E11.5;D;En |
Significance: 0.00297294 |
Significance: 0.0170167 |
wES;Fr_lmb;E11.5;D;En |
Significance: 0.00239852 |
Significance: 0.0553951 |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00189272 |
Significance: 0.00861143 |
wES;FaceP;E11.5;D;En |
Significance: 0.0396911 |
Significance: 0.0367328 |
MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0449756 |
Significance: 0.021476 |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.04188119999999999 |
Significance: 0.0133436 |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.013434999999999999 |
Significance: 0.0150715 |
BCK_SKN;A;GEO |
Significance: 0.00389948 |
Significance: 0.0105488 |
NPC;F129;A;GEO |
Significance: 0.0460386 |
Significance: 0.0409827 |
G_NRN_P;A;GEO |
Significance: 0.00421285 |
Significance: 0.0124966 |
wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.00325624 |
Significance: 0.00339586 |
CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00437049 |
Significance: 0.0101182 |
RTN;D1;D;En |
Significance: 0.00272056 |
Significance: 0.00389667 |
wES;RTN;E11.5;D;En |
Significance: 0.00145722 |
Significance: 0.00440676 |
Muller;P12;D;En |
Significance: 0.0036969999999999998 |
Significance: 0.00953644 |
wES.Fr_BRN;E14.4;D;En |
Significance: 0.00277031 |
Significance: 0.0031895 |
Fr_BRN;P0;D;En |
Significance: 0.027206099999999997 |
Significance: 0.0165168 |
wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00298419 |
Significance: 0.0151553 |
wES;Md_BRN;E14.4;D;En |
Significance: 0.00214642 |
Significance: 0.0132139 |
Md_BRN;D;En |
Significance: 0.011554799999999999 |
Significance: 0.00728615 |
wES;WHL_BRN;E14.5;D;En |
Significance: 0.00255908 |
Significance: 0.00344563 |
Cell type | Modisco | Homer |
---|---|---|
wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0541785 | Absent |
npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0113319 | Absent |
wES;posterior;2;E9.5;A;GEO |
Significance: 0.013265100000000002 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.0322059 | Absent |
wES;posterior;1;E8.5;A;GEO |
Significance: 0.00761415 | Absent |
npES;posterior_delC;E8.5;A;GEO |
Significance: 0.00255856 | Absent |
ES;E14;A;GEO |
Significance: 0.038042599999999996 | Absent |
NPC;G4;A;GEO |
Significance: 0.0359206 | Absent |
NPC;mE6;A;GEO |
Significance: 0.043975099999999996 | Absent |
iPV_NRN;A;GEO |
Significance: 0.0464952 | Absent |
wES;Md_BRN;E11.5;D;En |
Significance: 0.0488004 | Absent |
wES;MSDRM;E11.5;D;En |
Significance: 0.0126876 | Absent |
Hnd_BRN;P0;D;En |
Significance: 0.00149887 | Absent |
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0544319 | Absent |
npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.00244616 | Absent |
npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.00278134 | Absent |
Cell type | Modisco | Homer |
---|---|---|
BRN;OLFTRY_BLB;A;CL | Absent |
Significance: 0.0584003 |
wES.CRNL_NRL_CRST;E10.5;A;GEO | Absent |
Significance: 0.0597203 |
iVIP_NRN;A;GEO | Absent |
Significance: 0.0212444 |
MN1;D;En | Absent |
Significance: 0.032379700000000004 |
Melanotrope;A;GEO | Absent |
Significance: 0.0218391 |
CN_PHT_RCPTR;A;GEO | Absent |
Significance: 0.0130994 |