In [1]:
# Parameters
data_name = "Vsx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:47:34,636 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Vsx1: Motif: M03267_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Vsx1: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00297294

Pattern: motif4.motif

Significance: 0.0170167

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00239852

Pattern: motif5.motif

Significance: 0.0553951

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00189272

Pattern: motif3.motif

Significance: 0.00861143

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0396911

Pattern: motif3.motif

Significance: 0.0367328

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0449756

Pattern: motif6.motif

Significance: 0.021476

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.04188119999999999

Pattern: motif13.motif

Significance: 0.0133436

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013434999999999999

Pattern: motif16.motif

Significance: 0.0150715

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00389948

Pattern: motif9.motif

Significance: 0.0105488

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0460386

Pattern: motif7.motif

Significance: 0.0409827

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00421285

Pattern: motif13.motif

Significance: 0.0124966

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00325624

Pattern: motif2.motif

Significance: 0.00339586

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00437049

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00272056

Pattern: motif2.motif

Significance: 0.00389667

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00145722

Pattern: motif3.motif

Significance: 0.00440676

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0036969999999999998

Pattern: motif4.motif

Significance: 0.00953644

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00277031

Pattern: motif2.motif

Significance: 0.0031895

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.027206099999999997

Pattern: motif10.motif

Significance: 0.0165168

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00298419

Pattern: motif3.motif

Significance: 0.0151553

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00214642

Pattern: motif6.motif

Significance: 0.0132139

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011554799999999999

Pattern: motif14.motif

Significance: 0.00728615

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00255908

Pattern: motif2.motif

Significance: 0.00344563

Unique Cell types only TF-MoDISco finds Vsx1: #16

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0541785

/

Pattern: metacluster_0/pattern_25

Significance: 0.014709299999999998

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0113319

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013265100000000002

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00761415

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00255856

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0359206

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.043975099999999996

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0464952

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0488004

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0126876

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00149887

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0544319

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00244616

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00278134

Absent
Unique Cell types only Homer finds Vsx1: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0584003

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0597203

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0212444

MN1;D;EnAbsent

Pattern: motif9.motif

Significance: 0.032379700000000004

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0218391

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0130994