In [1]:
# Parameters
data_name = "Alx4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:57:28,822 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Alx4: Motif: M00487_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Alx4: #21

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.020314

Pattern: motif4.motif

Significance: 0.00824027

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0203945

Pattern: motif5.motif

Significance: 0.030193900000000003

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.026205700000000002

Pattern: motif3.motif

Significance: 0.00237465

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0350533

Pattern: motif3.motif

Significance: 0.0108561

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0449756

Pattern: motif6.motif

Significance: 0.026692900000000002

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 7.656e-05

Pattern: motif9.motif

Significance: 0.0387827

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.052506500000000005

Pattern: motif13.motif

Significance: 0.014377700000000002

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0314807

Pattern: motif16.motif

Significance: 0.0174083

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.010751700000000001

Pattern: motif9.motif

Significance: 0.00899313

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0121338

Pattern: motif13.motif

Significance: 0.016236700000000003

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.012050100000000001

Pattern: motif2.motif

Significance: 0.00537413

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.021537200000000003

Pattern: motif6.motif

Significance: 0.02008

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.026879400000000005

Pattern: motif2.motif

Significance: 0.00513467

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.026531299999999997

Pattern: motif3.motif

Significance: 0.00577516

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0309894

Pattern: motif4.motif

Significance: 0.00785303

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0131222

Pattern: motif2.motif

Significance: 0.00482473

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.027206099999999997

Pattern: motif10.motif

Significance: 0.023066299999999998

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0213359

Pattern: motif3.motif

Significance: 0.0151553

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.011988200000000001

Pattern: motif6.motif

Significance: 0.0182488

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011554799999999999

Pattern: motif14.motif

Significance: 0.0480145

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.012142100000000001

Pattern: motif2.motif

Significance: 0.00530036

Unique Cell types only TF-MoDISco finds Alx4: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.026648200000000004

/

Pattern: metacluster_0/pattern_25

Significance: 0.00285935

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0113319

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.013953

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.035883099999999994

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0244058

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00042027199999999996

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0418372

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0359206

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0428084

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0505859

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0438957

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.025976

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0355852

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0351718

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0424934

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.051106099999999995

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0332695

Absent
Unique Cell types only Homer finds Alx4: #6

Cell typeModiscoHomer
BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0584003

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0215532

NPC;F129;A;GEOAbsent

Pattern: motif7.motif

Significance: 0.0427586

iVIP_NRN;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0265818

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0218391

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.015502100000000001