# Parameters
data_name = "Gm5294"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:10:41,005 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Gm5294: Motif: M01984_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Gm5294: #4

Cell type	Modisco	Homer
LVR;8wks;D;En	Pattern: metacluster_0/pattern_13 Significance: 0.00893493 / Pattern: metacluster_0/pattern_14 Significance: 0.0588259	Pattern: motif7.motif Significance: 0.037868900000000004
STMCH;P0;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0134584	Pattern: motif3.motif Significance: 0.0252931
LNG;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.000711316	Pattern: motif5.motif Significance: 0.00184568
wES;LNG;E14.5;D;En	Pattern: metacluster_1/pattern_5 Significance: 7.16846e-05	Pattern: motif11.motif Significance: 0.0263232

Unique Cell types only TF-MoDISco finds Gm5294: #27

Cell type	Modisco	Homer
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_23 Significance: 0.00046506900000000003	Absent
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00299246	Absent
LVR;8wks;D;GEO	Pattern: metacluster_1/pattern_4 Significance: 0.0086087	Absent
LNG;8wks;D;GEO	Pattern: metacluster_0/pattern_5 Significance: 0.00811147	Absent
3134_mammaryADNCRCNM;D;GE	Pattern: metacluster_1/pattern_18 Significance: 0.00376471 / Pattern: metacluster_1/pattern_21 Significance: 0.029513499999999998	Absent
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.0124935	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.00216814	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00108979	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00107788	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00112397	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.00140437	Absent
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.000553242	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.00141296	Absent
KDNY;P0;D;En	Pattern: metacluster_1/pattern_7 Significance: 0.00181908	Absent
KDNY;8wks;D;En	Pattern: metacluster_1/pattern_24 Significance: 0.00133941	Absent
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_23 Significance: 0.00077796	Absent
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00104734	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0222248	Absent
SKN_EPTHL;A;GEO	Pattern: metacluster_0/pattern_22 Significance: 0.0008712969999999999	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.000648422	Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.007459100000000001	Absent
LVR;P0;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.00607403	Absent
LNG;8wks;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.00326262	Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En	Pattern: metacluster_1/pattern_14 Significance: 0.00298785	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_19 Significance: 0.000729037	Absent
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.057753399999999996	Absent
placenta;A;CL	Pattern: metacluster_0/pattern_23 Significance: 0.031791700000000006	Absent

No Cell types only Homer finds Gm5294