In [1]:
# Parameters
data_name = "Tgif1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:45:23,240 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tgif1: Motif: M09211_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tgif1: #19

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0568121

Pattern: motif5.motif

Significance: 0.032621199999999996

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00637636

Pattern: motif15.motif

Significance: 0.0112068

preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.025961

Pattern: motif12.motif

Significance: 0.0102829

BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_15

Significance: 0.00462071

Pattern: motif8.motif

Significance: 0.0494985

Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0249329

Pattern: motif11.motif

Significance: 0.00573459

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0193255

Pattern: motif10.motif

Significance: 0.00738291

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.019671

Pattern: motif10.motif

Significance: 0.014336700000000003

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0468986

Pattern: motif9.motif

Significance: 0.00721965

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00524925

Pattern: motif9.motif

Significance: 0.0113916

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00728535

Pattern: motif9.motif

Significance: 0.0110289

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0141344

Pattern: motif11.motif

Significance: 0.00894215

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.052459500000000006

Pattern: motif13.motif

Significance: 0.00567272

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.027662799999999998

Pattern: motif11.motif

Significance: 0.0485226

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.04846280000000001

Pattern: motif2.motif

Significance: 0.0167764

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0313481

Pattern: motif16.motif

Significance: 0.0152315

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.040922599999999996

Pattern: motif4.motif

Significance: 0.00907911

Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00947066

Pattern: motif19.motif

Significance: 0.0428264

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00769393

Pattern: motif13.motif

Significance: 0.0144249

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.014763900000000002

Pattern: motif19.motif

Significance: 0.0267995

/

Pattern: motif20.motif

Significance: 0.050535500000000004

Unique Cell types only TF-MoDISco finds Tgif1: #31

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0197491

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0327215

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.044338199999999994

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_24

Significance: 0.0201622

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00486298

/

Pattern: metacluster_0/pattern_19

Significance: 0.0225669

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.00847325

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.014842900000000001

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0038459

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0452741

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.014020099999999999

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0191048

/

Pattern: metacluster_0/pattern_13

Significance: 0.0246532

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00508457

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0452962

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00932805

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0185857

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0367615

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.0463666

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0349329

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0505402

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.018974

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0337171

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0436659

Absent
Heart;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.0327039

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0510148

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.0162714

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0504011

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0110867

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0424176

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00846623

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0173813

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.0240327

Absent
Unique Cell types only Homer finds Tgif1: #7

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.0213429

LNG;P0;D;EnAbsent

Pattern: motif18.motif

Significance: 0.0503891

wES;LNG;E14.5;D;EnAbsent

Pattern: motif13.motif

Significance: 0.016567500000000002

prePLSM_B;A;GEOAbsent

Pattern: motif22.motif

Significance: 0.023848599999999998

DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.00889657

iVIP_NRN;A;GEOAbsent

Pattern: motif2.motif

Significance: 0.05508480000000001

G_NRN_P;A;GEOAbsent

Pattern: motif5.motif

Significance: 0.045372699999999995