# Parameters
data_name = "Pou4f3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:29:17,620 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pou4f3: Motif: M00547_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pou4f3: #4

Cell type	Modisco	Homer
wES;Hnd_BRN;E14.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0239296 / Pattern: metacluster_0/pattern_8 Significance: 0.0276249	Pattern: motif3.motif Significance: 0.0151553
Muller;P12;D;En	Pattern: metacluster_1/pattern_5 Significance: 0.026249400000000003	Pattern: motif4.motif Significance: 0.013734999999999999
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0093618	Pattern: motif14.motif Significance: 0.0209711
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0147293	Pattern: motif24.motif Significance: 0.033292800000000004

Unique Cell types only TF-MoDISco finds Pou4f3: #22

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0101292	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.015099000000000001	Absent
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.0105095	Absent
wES;FaceP;E14.5;D;En	Pattern: metacluster_0/pattern_7 Significance: 0.0473135	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.019309	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_16 Significance: 0.0341351	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.035736300000000006	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_14 Significance: 0.0366739	Absent
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_25 Significance: 0.039114499999999996	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.0130708	Absent
wES;posterior;2;E9.5;A;GEO	Pattern: metacluster_0/pattern_21 Significance: 0.0567312	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0100149	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0171296	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0164768	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.023921400000000002	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0209046	Absent
G_NRN_P;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.011139399999999999	Absent
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.00734893	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0168272	Absent
Fr_BRN;P0;D;En	Pattern: metacluster_1/pattern_10 Significance: 0.046607199999999994	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.01275	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.014153799999999998	Absent

No Cell types only Homer finds Pou4f3